Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O06
(859 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 254 6e-68
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 253 1e-67
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.98
At2g47550.1 68415.m05934 pectinesterase family protein contains ... 30 1.7
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.7
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.7
At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein 29 5.2
At1g18670.1 68414.m02330 protein kinase family protein contains ... 29 5.2
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 6.9
At1g74510.2 68414.m08632 kelch repeat-containing F-box family pr... 28 6.9
At1g74510.1 68414.m08631 kelch repeat-containing F-box family pr... 28 6.9
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 6.9
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 28 9.1
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 28 9.1
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 254 bits (622), Expect = 6e-68
Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%)
Frame = +3
Query: 177 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 356
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 30 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 89
Query: 357 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 536
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 90 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 149
Query: 537 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 716
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 209
Query: 717 RKGPLIIFNKDQG-LTRAFRNIPGVELLNV 803
RKGPL++F + + +AFRN+PGVEL +V
Sbjct: 210 RKGPLVVFGTEGAKIVKAFRNLPGVELCHV 239
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 253 bits (619), Expect = 1e-67
Identities = 119/210 (56%), Positives = 144/210 (68%), Gaps = 1/210 (0%)
Frame = +3
Query: 177 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 356
LP V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 29 LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 88
Query: 357 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 536
THR+GQ AFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 89 THRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHK 148
Query: 537 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 716
IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 208
Query: 717 RKGPLIIFNKD-QGLTRAFRNIPGVELLNV 803
RKGPL+++ + + +AFRN+PGVEL +V
Sbjct: 209 RKGPLVVYGTEGSKIVKAFRNLPGVELCHV 238
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 402 HHDTCYRRHPDRTYGYHHHGHAEF 331
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At2g47550.1 68415.m05934 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 560
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -3
Query: 767 SASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGL 594
+A T+ +ED + SLT+D + T STKTL L +D+ L A ++
Sbjct: 92 AAKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDVHTFLSAAITNEQT--C 149
Query: 593 VDLLDFVGYNQGKLGNLFNN 534
++ L G G+LFN+
Sbjct: 150 LEGLKSTASENGLSGDLFND 169
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 398 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 577
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 578 S 580
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 398 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 577
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 578 S 580
S
Sbjct: 523 S 523
>At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein
Length = 320
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = -3
Query: 731 EGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKL 552
E SL +D A F ++ +K + L+ KD+R ++ ++ D++ G + K+
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301
Query: 551 GNL 543
G +
Sbjct: 302 GEI 304
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 515 RSG*RTHY*KDSRASLGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*GVQVSASS 676
R+G H DS ++L Q P + + H+ A QG V + +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 174 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 269
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
>At1g74510.2 68414.m08632 kelch repeat-containing F-box family
protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
F-box domain
Length = 451
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 848 VPNDLPEPASGGSACXIQELHTRDVAESASQTLILVED 735
+PN LPE +SGG +E+ A A + +V+D
Sbjct: 316 IPNMLPERSSGGGGDQAKEIAAATAASEAPPLVAVVKD 353
>At1g74510.1 68414.m08631 kelch repeat-containing F-box family
protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
F-box domain
Length = 451
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 848 VPNDLPEPASGGSACXIQELHTRDVAESASQTLILVED 735
+PN LPE +SGG +E+ A A + +V+D
Sbjct: 316 IPNMLPERSSGGGGDQAKEIAAATAASEAPPLVAVVKD 353
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 604 CLVLLISWTLSATTKGSSGIFS 539
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 557 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLR 420
KLG N +SS LN + SS CC L +VDA + LR
Sbjct: 84 KLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALR 129
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 174 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 269
PLPF K+P +PD++ H + NS+ C+
Sbjct: 367 PLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,117
Number of Sequences: 28952
Number of extensions: 409604
Number of successful extensions: 1346
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -