Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O05
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.4  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 126 NSYVTPKKLLNHSIIQPKMYSNKDAANP 209
           N  VTPK   N + + P+  S+ ++A+P
Sbjct: 146 NKVVTPKTSPNEASMSPQSTSSNNSASP 173


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 126 NSYVTPKKLLNHSIIQPKMYSNKDAANP 209
           N  VTPK   N + + P+  S+ ++A+P
Sbjct: 166 NKVVTPKTSPNEASMSPQSTSSNNSASP 193


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 287 GSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHR-CTVASRCRVELIN 451
           G  + SY  +C  S         +C     P GGGK +K  +  T+ S  +++ +N
Sbjct: 86  GYHLGSYAANCPPS----PKDDEKCLSLERPSGGGKGKKMRKPRTIYSSLQLQQLN 137


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 465 RPRNSLMSSTLHLEATVHRCCFR 397
           R R  L++  +H EA V R C++
Sbjct: 565 RHRERLVARGIHAEALVPRWCYQ 587


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,928
Number of Sequences: 336
Number of extensions: 4549
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)