BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O05 (855 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 30 0.36 SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5 SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.9 SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 26 7.8 >SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 197 Score = 30.3 bits (65), Expect = 0.36 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 332 CHYGSSFFHSYPLLSQCRPVDFT 264 C GSS +S P SQC PVD+T Sbjct: 44 CVVGSSCIYSNPWYSQCIPVDYT 66 >SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 26.6 bits (56), Expect = 4.5 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +3 Query: 117 NTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDCS 266 NT Y L+ S+ S+ ++ N PT + N T YQN+ S Sbjct: 350 NTTYFYWNSTSSLSSSVFT-NTTSSSNSTNSSIPTTYPSNSTTYQNITTS 398 >SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual Length = 339 Score = 26.2 bits (55), Expect = 5.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -2 Query: 287 QCRPVDFTAVHILIGRWIQGPLGGI 213 +CRP D VH+ ++Q P GI Sbjct: 171 ECRPGDVRIVHVASIAYLQAPYSGI 195 >SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr 2|||Manual Length = 667 Score = 25.8 bits (54), Expect = 7.8 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 452 EFLGRFMESMGMGLARSWRSKSSFRTYFTFDRRVS 556 EFL + + L RSW + + +Y + DRR S Sbjct: 254 EFLCSASSVVALQLIRSWHTDVGYLSYVSLDRRWS 288 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,365,669 Number of Sequences: 5004 Number of extensions: 72471 Number of successful extensions: 164 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 424464280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -