Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O05
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    30   0.36 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   5.9  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   7.8  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 332 CHYGSSFFHSYPLLSQCRPVDFT 264
           C  GSS  +S P  SQC PVD+T
Sbjct: 44  CVVGSSCIYSNPWYSQCIPVDYT 66


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 117 NTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDCS 266
           NT   Y      L+ S+      S+ ++ N   PT +  N T YQN+  S
Sbjct: 350 NTTYFYWNSTSSLSSSVFT-NTTSSSNSTNSSIPTTYPSNSTTYQNITTS 398


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 287 QCRPVDFTAVHILIGRWIQGPLGGI 213
           +CRP D   VH+    ++Q P  GI
Sbjct: 171 ECRPGDVRIVHVASIAYLQAPYSGI 195


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 452 EFLGRFMESMGMGLARSWRSKSSFRTYFTFDRRVS 556
           EFL      + + L RSW +   + +Y + DRR S
Sbjct: 254 EFLCSASSVVALQLIRSWHTDVGYLSYVSLDRRWS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,669
Number of Sequences: 5004
Number of extensions: 72471
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)