Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O05
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 33 0.38
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 30 2.0
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 3.6
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 29 4.7
10_08_0379 - 17373533-17374147 29 6.2
06_01_1160 - 9868340-9868360,9868639-9868986 29 6.2
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 29 6.2
06_03_1215 - 28474019-28474079,28475658-28476739 28 8.3
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 28 8.3
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 28 8.3
03_06_0187 + 32209924-32210634 28 8.3
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 32.7 bits (71), Expect = 0.38
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = -2
Query: 371 SFLYIEFGWRWRRCHYGSSFFHSYPLLSQC-RP---VDFTAVHI---LIGRWIQGPLGGI 213
S + FGW R +GS F H+ + C P + +A+HI +IG + G G +
Sbjct: 204 SCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMV-GGAGAL 262
Query: 212 SWICRILVGIHFRL 171
+C +L G ++R+
Sbjct: 263 LCVCGLLYGGYWRI 276
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 340 HLHPNSM*RKEKPPWRWKIPKTTPMYSCLQVQSGTHQRIPGAVHG 474
H H ++M +++ P P P++ L ++ T Q IPGA G
Sbjct: 485 HAHSDNMIQEQGTPHGVNNPDAAPVFYSLHQENVTKQHIPGATAG 529
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 117 NTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVD 260
N LN + P + N SI+ + SN D P P W L + +++
Sbjct: 242 NNLNEEILPTLIGNLSILTSLLLSNNDLTGPMPPFHWNLGSLKHLSLE 289
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 429 LEATVHRCCFRYFPPPWGLLLPLHRVWVEVAPVPLWQQLLS*LSIAEPMPPSRLHCSP 256
++ H R+ P LL+ L + V + P+ L LL L I P P L CSP
Sbjct: 509 VDVVQHVAGVRHVPRRAYLLVQLPHLLVRLPPLRLVAVLLLLLMILPPRPRRSLECSP 566
>10_08_0379 - 17373533-17374147
Length = 204
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 278 GGIGSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVA-SRCRVELINE 454
GG G M + S S GA+ ++ + RR + G+Y + HR ++ +RC + E
Sbjct: 18 GGGGGGMATGATSA--SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLE 75
Query: 455 FLGRFMESMG 484
FL R+++ G
Sbjct: 76 FL-RYLDQFG 84
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 320 CHSGTGATSTQTRCRGRRSPHGG 388
C SG G T RCRG R GG
Sbjct: 31 CSSGAGLTCRDNRCRGGRGGIGG 53
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = +2
Query: 269 SRLGGIGSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRVELI 448
+R G + A + RS A S RR GGG+ + + A+R +EL
Sbjct: 579 ARAGDLDGAAEIVRRSSGGGSPAAWSALLSACRRRGDGGGGEVGR----SAAARV-LELE 633
Query: 449 NEFLGRFMESMGMGLARSW 505
++ SMGMGL + W
Sbjct: 634 PGKSAGYLMSMGMGLGKGW 652
>06_03_1215 - 28474019-28474079,28475658-28476739
Length = 380
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 349 PNSM*RKEKPPWRWKIPKTTPMYSCLQVQSGTHQRIPGAVHGINGDGVGQVMEIQKFLP- 525
P ++ + PW +P TP CL ++S + P VHG + + F+
Sbjct: 127 PKNLRNNDAGPWSLHLPAATP---CLSMESCWYSVRPPHVHGPGASALKSLTFKDSFMVL 183
Query: 526 NLLYL*STGFP 558
+ YL T FP
Sbjct: 184 HPGYLQDTAFP 194
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 501 DLANP-IPIDSMNRPRNSLMSSTLHLEATVHRCCFRYFPPPWGLLLPLHR 355
D+A P P D+++ PR +S + T + P P G P+HR
Sbjct: 300 DIAGPSAPADNLDAPRKGTAASLMDWNPTARTFQWEDSPDPDGSRSPIHR 349
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 435 LHLEATVHRCCFRYFPPPWGLLLPLHRVWVEVAPVPLW 322
L+++ H +++P +G+L +RV++E+ +PL+
Sbjct: 301 LNIQIAFHGTHTKHYPGIFGVLAKYYRVYLEILTIPLF 338
>03_06_0187 + 32209924-32210634
Length = 236
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 510 PKVPSEPTLPLIDGFPVQPDATGPSISGYTTAAG---SGPT 623
P +P+ PT+P I G P A GP+I T G GPT
Sbjct: 67 PTIPTIPTVPTIPGVP----AVGPTIPAIPTIPGVPAVGPT 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,283,506
Number of Sequences: 37544
Number of extensions: 539686
Number of successful extensions: 1484
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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