Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O05
(855 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23) 31 0.90
SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0) 31 1.2
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 30 2.8
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 29 3.6
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 3.6
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) 28 8.4
SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +3
Query: 507 DPKVPSEPTLPLIDGFPVQPDA-TGPSI-SGYTTAAG----SGPTFQHG 635
DP VPS+PT+P P P TGP++ SG T +G SGPT G
Sbjct: 454 DPTVPSDPTVPAGPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGPTVPSG 502
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 507 DPKVPSEPTLPLIDGFPVQP----DATGPSISGYTTAAGSGPTFQHG 635
DP VPS+PT P + P P D T P++ T +GPT G
Sbjct: 427 DPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVP-AGPTVPSG 472
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSI 587
DP VPS+PT P + P P D T P++
Sbjct: 412 DPTVPSDPTDPTVPSDPTVPSDPTDPTV 439
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSISGYTT--AAGSGPTFQHG 635
DP VPS+PT+P P P D T P++ T S PT G
Sbjct: 421 DPTVPSDPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVPAG 466
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 251 KCGLQ*SRLGGIGSAMDSYERSCCHSGTGATSTQTR-CRGRRSPHGG----GKYRKQHRC 415
KC L R+ G SA S+ SC S G T T+TR C + +GG G +K +C
Sbjct: 79 KCNLTPCRVNGGWSAYSSWS-SCTKSCGGGTQTRTRTCTNPKPSNGGRDCWGDSKKTRKC 137
Query: 416 TVA 424
+A
Sbjct: 138 GIA 140
>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
Length = 898
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 177 KMYSNKDAANPGYPTQWALNPTAYQNVDCSEVDWAALAQQWI 302
K Y +K A PT+ A AY + C +V WA + +WI
Sbjct: 142 KTYGSKTIAI-SLPTESAFYLLAYGSAVCQQVQWATVTSEWI 182
>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
Length = 289
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 347 TQTRCRGRRSPHGGGKYRKQHRCTVASRC 433
T+ RC G RS HG G + K RCT +RC
Sbjct: 2 TKKRCNGGRSKHGRG-HVKFVRCTNCARC 29
>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 387 PPWGLLLPLHRVWVEVAPVPLWQQLLS*LSIAEPMPP 277
PP G+L P +W V P PLW + S L P+PP
Sbjct: 675 PPQGMLSPAP-LWY-VVPFPLWYVIPSLLRYVVPLPP 709
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPSISGYTTAAGSGPT 623
G DP PS+PT+P P P A + P++S TA S PT
Sbjct: 9 GPSDPTGPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAP-SDPT 50
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPS 584
G DP PS+PT P P P A TGPS
Sbjct: 129 GQSDPTAPSDPTAPSDPTGPSDPTAPTGPS 158
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDATGPSISGYTTAAGSGPT 623
G DP VPS+PT+P P P + + S PT
Sbjct: 15 GPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAPSDPTGPSDPT 56
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3
Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584
G DP PS+PT P P P D TGPS
Sbjct: 339 GPSDPTAPSDPTAPSDPTVPSDPTGPSDPTGPS 371
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3
Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584
G DP PS+PT P P P D TGPS
Sbjct: 369 GPSDPTAPSDPTAPSDPTVPSDPTGQSDPTGPS 401
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 206 SRISHPVGLESNGLSKCGL--Q*SRLGG-IGSAMDSYERSCCHSGTGATSTQTRCRGRRS 376
SRI+ VG +N + C + + S + +A S R +SGTG T C G+ S
Sbjct: 707 SRIAGRVGYSANPATNCFIHDECSECSDTLPTACTSTMRCLRYSGTGVADFYTICAGQSS 766
Query: 377 PHGGGKYRKQ 406
GG K Q
Sbjct: 767 DSGGLKVISQ 776
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
P EG A G GNP +KGK G+ G+ GS
Sbjct: 176 PGNEG--ARGLPGNPGLKGKRGATGSRGS 202
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 278 GGIGSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYR 400
GG S+M Y + SG G S T RGR +P G G YR
Sbjct: 275 GGYDSSMGQYSQEA--SGYGP-SRGTGGRGRGAPRGSGGYR 312
>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 454 IPGAVHGINGDGVGQVMEIQKFLPNLLYL*STGFP 558
+P A H I + G+ + I +LPN+L ST P
Sbjct: 283 VPSATHSIEKEEYGRRLTIHVYLPNVLMDNSTNSP 317
>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
Length = 2279
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NVLYLVSSDVTVSFVCFCVNFI 82
++LYLVS+ + +CF VNF+
Sbjct: 139 DILYLVSAVTFAALICFVVNFV 160
>SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 282 PPSRLHCSPHFDRPLDSRPTGWDILDLPH 196
PP+ H SPH R D PT D L H
Sbjct: 99 PPNLFHISPHSMRSADHFPTNMDPSSLIH 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,872,408
Number of Sequences: 59808
Number of extensions: 589715
Number of successful extensions: 4836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4810
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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