BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O05 (855 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17 SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22 SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23) 31 0.90 SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0) 31 1.2 SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6 SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 30 2.8 SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 29 3.6 SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 3.6 SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4 SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) 28 8.4 SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 610 Score = 33.9 bits (74), Expect = 0.17 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Frame = +3 Query: 507 DPKVPSEPTLPLIDGFPVQPDA-TGPSI-SGYTTAAG----SGPTFQHG 635 DP VPS+PT+P P P TGP++ SG T +G SGPT G Sbjct: 454 DPTVPSDPTVPAGPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGPTVPSG 502 Score = 31.9 bits (69), Expect = 0.68 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +3 Query: 507 DPKVPSEPTLPLIDGFPVQP----DATGPSISGYTTAAGSGPTFQHG 635 DP VPS+PT P + P P D T P++ T +GPT G Sbjct: 427 DPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVP-AGPTVPSG 472 Score = 29.5 bits (63), Expect = 3.6 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +3 Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSI 587 DP VPS+PT P + P P D T P++ Sbjct: 412 DPTVPSDPTDPTVPSDPTVPSDPTDPTV 439 Score = 28.7 bits (61), Expect = 6.4 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +3 Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSISGYTT--AAGSGPTFQHG 635 DP VPS+PT+P P P D T P++ T S PT G Sbjct: 421 DPTVPSDPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVPAG 466 >SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 756 Score = 33.5 bits (73), Expect = 0.22 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Frame = +2 Query: 251 KCGLQ*SRLGGIGSAMDSYERSCCHSGTGATSTQTR-CRGRRSPHGG----GKYRKQHRC 415 KC L R+ G SA S+ SC S G T T+TR C + +GG G +K +C Sbjct: 79 KCNLTPCRVNGGWSAYSSWS-SCTKSCGGGTQTRTRTCTNPKPSNGGRDCWGDSKKTRKC 137 Query: 416 TVA 424 +A Sbjct: 138 GIA 140 >SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23) Length = 898 Score = 31.5 bits (68), Expect = 0.90 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 177 KMYSNKDAANPGYPTQWALNPTAYQNVDCSEVDWAALAQQWI 302 K Y +K A PT+ A AY + C +V WA + +WI Sbjct: 142 KTYGSKTIAI-SLPTESAFYLLAYGSAVCQQVQWATVTSEWI 182 >SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0) Length = 289 Score = 31.1 bits (67), Expect = 1.2 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 347 TQTRCRGRRSPHGGGKYRKQHRCTVASRC 433 T+ RC G RS HG G + K RCT +RC Sbjct: 2 TKKRCNGGRSKHGRG-HVKFVRCTNCARC 29 >SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 778 Score = 30.7 bits (66), Expect = 1.6 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -1 Query: 387 PPWGLLLPLHRVWVEVAPVPLWQQLLS*LSIAEPMPP 277 PP G+L P +W V P PLW + S L P+PP Sbjct: 675 PPQGMLSPAP-LWY-VVPFPLWYVIPSLLRYVVPLPP 709 >SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) Length = 853 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPSISGYTTAAGSGPT 623 G DP PS+PT+P P P A + P++S TA S PT Sbjct: 9 GPSDPTGPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAP-SDPT 50 Score = 29.9 bits (64), Expect = 2.8 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +3 Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPS 584 G DP PS+PT P P P A TGPS Sbjct: 129 GQSDPTAPSDPTAPSDPTGPSDPTAPTGPS 158 Score = 28.3 bits (60), Expect = 8.4 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDATGPSISGYTTAAGSGPT 623 G DP VPS+PT+P P P + + S PT Sbjct: 15 GPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAPSDPTGPSDPT 56 Score = 28.3 bits (60), Expect = 8.4 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%) Frame = +3 Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584 G DP PS+PT P P P D TGPS Sbjct: 339 GPSDPTAPSDPTAPSDPTVPSDPTGPSDPTGPS 371 Score = 28.3 bits (60), Expect = 8.4 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%) Frame = +3 Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584 G DP PS+PT P P P D TGPS Sbjct: 369 GPSDPTAPSDPTAPSDPTVPSDPTGQSDPTGPS 401 >SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) Length = 3035 Score = 29.5 bits (63), Expect = 3.6 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +2 Query: 206 SRISHPVGLESNGLSKCGL--Q*SRLGG-IGSAMDSYERSCCHSGTGATSTQTRCRGRRS 376 SRI+ VG +N + C + + S + +A S R +SGTG T C G+ S Sbjct: 707 SRIAGRVGYSANPATNCFIHDECSECSDTLPTACTSTMRCLRYSGTGVADFYTICAGQSS 766 Query: 377 PHGGGKYRKQ 406 GG K Q Sbjct: 767 DSGGLKVISQ 776 >SB_25350| Best HMM Match : Collagen (HMM E-Value=0) Length = 1112 Score = 29.5 bits (63), Expect = 3.6 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -3 Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506 P EG A G GNP +KGK G+ G+ GS Sbjct: 176 PGNEG--ARGLPGNPGLKGKRGATGSRGS 202 >SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 314 Score = 28.7 bits (61), Expect = 6.4 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = +2 Query: 278 GGIGSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYR 400 GG S+M Y + SG G S T RGR +P G G YR Sbjct: 275 GGYDSSMGQYSQEA--SGYGP-SRGTGGRGRGAPRGSGGYR 312 >SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 323 Score = 28.3 bits (60), Expect = 8.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 454 IPGAVHGINGDGVGQVMEIQKFLPNLLYL*STGFP 558 +P A H I + G+ + I +LPN+L ST P Sbjct: 283 VPSATHSIEKEEYGRRLTIHVYLPNVLMDNSTNSP 317 >SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) Length = 2279 Score = 28.3 bits (60), Expect = 8.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2 Query: 17 NVLYLVSSDVTVSFVCFCVNFI 82 ++LYLVS+ + +CF VNF+ Sbjct: 139 DILYLVSAVTFAALICFVVNFV 160 >SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 127 Score = 28.3 bits (60), Expect = 8.4 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -1 Query: 282 PPSRLHCSPHFDRPLDSRPTGWDILDLPH 196 PP+ H SPH R D PT D L H Sbjct: 99 PPNLFHISPHSMRSADHFPTNMDPSSLIH 127 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,872,408 Number of Sequences: 59808 Number of extensions: 589715 Number of successful extensions: 4836 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4810 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2431332827 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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