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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O05
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)                34   0.17 
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   31   0.90 
SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              31   1.2  
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)                 30   2.8  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   29   3.6  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.6  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     28   8.4  
SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 507 DPKVPSEPTLPLIDGFPVQPDA-TGPSI-SGYTTAAG----SGPTFQHG 635
           DP VPS+PT+P     P  P   TGP++ SG T  +G    SGPT   G
Sbjct: 454 DPTVPSDPTVPAGPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGPTVPSG 502



 Score = 31.9 bits (69), Expect = 0.68
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 507 DPKVPSEPTLPLIDGFPVQP----DATGPSISGYTTAAGSGPTFQHG 635
           DP VPS+PT P +   P  P    D T P++    T   +GPT   G
Sbjct: 427 DPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVP-AGPTVPSG 472



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSI 587
           DP VPS+PT P +   P  P D T P++
Sbjct: 412 DPTVPSDPTDPTVPSDPTVPSDPTDPTV 439



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 507 DPKVPSEPTLPLIDGFPVQP-DATGPSISGYTT--AAGSGPTFQHG 635
           DP VPS+PT+P     P  P D T P++    T     S PT   G
Sbjct: 421 DPTVPSDPTVPSDPTDPTVPSDPTDPTVPSDPTDPTVPSDPTVPAG 466


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 251 KCGLQ*SRLGGIGSAMDSYERSCCHSGTGATSTQTR-CRGRRSPHGG----GKYRKQHRC 415
           KC L   R+ G  SA  S+  SC  S  G T T+TR C   +  +GG    G  +K  +C
Sbjct: 79  KCNLTPCRVNGGWSAYSSWS-SCTKSCGGGTQTRTRTCTNPKPSNGGRDCWGDSKKTRKC 137

Query: 416 TVA 424
            +A
Sbjct: 138 GIA 140


>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 177 KMYSNKDAANPGYPTQWALNPTAYQNVDCSEVDWAALAQQWI 302
           K Y +K  A    PT+ A    AY +  C +V WA +  +WI
Sbjct: 142 KTYGSKTIAI-SLPTESAFYLLAYGSAVCQQVQWATVTSEWI 182


>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 347 TQTRCRGRRSPHGGGKYRKQHRCTVASRC 433
           T+ RC G RS HG G + K  RCT  +RC
Sbjct: 2   TKKRCNGGRSKHGRG-HVKFVRCTNCARC 29


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 387 PPWGLLLPLHRVWVEVAPVPLWQQLLS*LSIAEPMPP 277
           PP G+L P   +W  V P PLW  + S L    P+PP
Sbjct: 675 PPQGMLSPAP-LWY-VVPFPLWYVIPSLLRYVVPLPP 709


>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 853

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPSISGYTTAAGSGPT 623
           G  DP  PS+PT+P     P  P A + P++S   TA  S PT
Sbjct: 9   GPSDPTGPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAP-SDPT 50



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDA-TGPS 584
           G  DP  PS+PT P     P  P A TGPS
Sbjct: 129 GQSDPTAPSDPTAPSDPTGPSDPTAPTGPS 158



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 498 GHGDPKVPSEPTLPLIDGFPVQPDATGPSISGYTTAAGSGPT 623
           G  DP VPS+PT+P     P  P  +    +       S PT
Sbjct: 15  GPSDPTVPSDPTVPSDPTAPSDPTVSSDPTAPSDPTGPSDPT 56



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584
           G  DP  PS+PT P     P  P    D TGPS
Sbjct: 339 GPSDPTAPSDPTAPSDPTVPSDPTGPSDPTGPS 371



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 498 GHGDPKVPSEPTLPLIDGFPVQP----DATGPS 584
           G  DP  PS+PT P     P  P    D TGPS
Sbjct: 369 GPSDPTAPSDPTAPSDPTVPSDPTGQSDPTGPS 401


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 206 SRISHPVGLESNGLSKCGL--Q*SRLGG-IGSAMDSYERSCCHSGTGATSTQTRCRGRRS 376
           SRI+  VG  +N  + C +  + S     + +A  S  R   +SGTG     T C G+ S
Sbjct: 707 SRIAGRVGYSANPATNCFIHDECSECSDTLPTACTSTMRCLRYSGTGVADFYTICAGQSS 766

Query: 377 PHGGGKYRKQ 406
             GG K   Q
Sbjct: 767 DSGGLKVISQ 776


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
           P  EG  A G  GNP +KGK G+ G+ GS
Sbjct: 176 PGNEG--ARGLPGNPGLKGKRGATGSRGS 202


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 278 GGIGSAMDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYR 400
           GG  S+M  Y +    SG G  S  T  RGR +P G G YR
Sbjct: 275 GGYDSSMGQYSQEA--SGYGP-SRGTGGRGRGAPRGSGGYR 312


>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 454 IPGAVHGINGDGVGQVMEIQKFLPNLLYL*STGFP 558
           +P A H I  +  G+ + I  +LPN+L   ST  P
Sbjct: 283 VPSATHSIEKEEYGRRLTIHVYLPNVLMDNSTNSP 317


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 17  NVLYLVSSDVTVSFVCFCVNFI 82
           ++LYLVS+    + +CF VNF+
Sbjct: 139 DILYLVSAVTFAALICFVVNFV 160


>SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 282 PPSRLHCSPHFDRPLDSRPTGWDILDLPH 196
           PP+  H SPH  R  D  PT  D   L H
Sbjct: 99  PPNLFHISPHSMRSADHFPTNMDPSSLIH 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,872,408
Number of Sequences: 59808
Number of extensions: 589715
Number of successful extensions: 4836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4810
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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