Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O05
(855 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107700-1|AAI07701.1| 93|Homo sapiens SFRS18 protein protein. 36 0.25
BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein. 36 0.25
BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein. 36 0.25
BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein. 36 0.25
BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein. 36 0.25
BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein. 36 0.25
BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein. 36 0.25
BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein. 36 0.25
AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein. 36 0.25
AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens ... 36 0.25
AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens ... 36 0.25
AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens ... 36 0.25
AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein. 36 0.25
AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein. 36 0.25
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 33 1.3
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 33 1.3
D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen prot... 33 1.3
AC073149-2|AAY24061.1| 365|Homo sapiens unknown protein. 33 1.3
>BC107700-1|AAI07701.1| 93|Homo sapiens SFRS18 protein protein.
Length = 93
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWLLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein.
Length = 274
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein.
Length = 256
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein.
Length = 270
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein.
Length = 257
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein.
Length = 805
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ90147 fis, clone HEMBB1001847, weakly similar to
NEUROGENIC PROTEIN BIG BRAIN. ).
Length = 520
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ14992 fis, clone Y79AA1001805. ).
Length = 499
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens
cDNA FLJ14752 fis, clone NT2RP3003071. ).
Length = 413
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein.
Length = 805
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 222 QWALNPTAYQNV-----DCSEVDWAALAQQWIAMKE 314
QW LN + D S++DWAALAQ WIA +E
Sbjct: 11 QWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQRE 46
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
P M GP GC G P + G+ G +G GS
Sbjct: 1397 PGMRGPPGPGCKGEPGLDGRRGVDGVPGS 1425
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
P M GP GC G P + G+ G +G GS
Sbjct: 1397 PGMRGPPGPGCKGEPGLDGRRGVDGVPGS 1425
>D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen
protein.
Length = 472
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
P M GP GC G P + G+ G +G GS
Sbjct: 179 PGMRGPPGPGCKGEPGLDGRRGVDGVPGS 207
>AC073149-2|AAY24061.1| 365|Homo sapiens unknown protein.
Length = 365
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 592 PDMEGPVASGCTGNPSIKGKVGSEGTFGS 506
P M GP GC G P + G+ G +G GS
Sbjct: 72 PGMRGPSGPGCKGEPGLDGRRGVDGVPGS 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,286,116
Number of Sequences: 237096
Number of extensions: 3159898
Number of successful extensions: 7360
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7340
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -