Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O05
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    32   0.60 
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    32   0.60 
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    30   1.8  
X75331-1|CAA53080.1|  620|Caenorhabditis elegans acetylcholinest...    28   9.7  
U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal acetyl...    28   9.7  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   9.7  

>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 592 PDMEGPVASGCTGNPSIKG 536
           PD E PVAS CT NP + G
Sbjct: 337 PDCENPVASACTPNPCVNG 355


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 246 YQNVDCSEVDWAALAQQWIAMKE 314
           +Q      VDWA LAQQW+AM++
Sbjct: 8   HQAQPAESVDWAQLAQQWMAMRD 30


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 498 GHGDPKVP--SEPTLPLIDGFPVQPDATGPSISGYTTAAGSGPT 623
           G   PKV   S+P +P+I G P+ PD T  S S  + +  S  T
Sbjct: 254 GRNKPKVEDVSQPIVPVITGDPLNPDWTSNSTSSMSASFRSSST 297


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 553 FPCNLMQLDLPYQAIQQQRGVDLHFNMGTGQLHKLINK 666
           F CN+M +  P Q ++Q+RG+ +      G +  +  K
Sbjct: 382 FDCNMMDIHYPVQQLEQERGIQVTCKRKNGDIMTITMK 419


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 495  PGHGDPKVPSEPTLPLIDG--FPVQPDATGPSISG 593
            PG   P  PS+P  P  +G   PV+P  +GPS +G
Sbjct: 977  PGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNG 1011


>X75331-1|CAA53080.1|  620|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 367 KEKPPWRWKIPKTTPMYSCLQ 429
           K K PWR  +  TTP  SC+Q
Sbjct: 64  KPKQPWRIPLNATTPPNSCIQ 84


>U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 367 KEKPPWRWKIPKTTPMYSCLQ 429
           K K PWR  +  TTP  SC+Q
Sbjct: 64  KPKQPWRIPLNATTPPNSCIQ 84


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -1

Query: 669 MFVDQLVELSSTHVEM*VHSPLLLYSLIWKVQLHQVARETRRSKVK*VRKELLDLHDLAN 490
           + ++ +++L  TH E        L  +I ++  HQV ++ + + +K V K    L +  +
Sbjct: 323 ILINAMLDLEPTHEE--------LSYMICQLCFHQVGKKLQGNILKTVEKLQEVLSNNLH 374

Query: 489 PIPIDSMNRPRNS-LMSSTLHLEATVHRCCFR 397
              ++ MN+P+ S  ++  + +  TV +C +R
Sbjct: 375 DYYVNQMNQPKYSKRIARMMKINNTVEQCLYR 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,190
Number of Sequences: 27780
Number of extensions: 428982
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)