Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O05
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    29   5.2  
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr...    28   6.9  
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr...    28   6.9  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    28   6.9  
At1g68150.1 68414.m07785 WRKY family transcription factor simila...    28   6.9  
At1g18860.1 68414.m02348 WRKY family transcription factor contai...    28   6.9  
At1g77890.1 68414.m09078 expressed protein                             28   9.1  

>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 368 RRSPHGGGKYRKQHR 412
           RRSPHG G+ ++QHR
Sbjct: 405 RRSPHGNGEGKRQHR 419


>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 444

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 296 MDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTV---ASRCRVELINEFLGR 466
           MD+ + S   S  G TST  +  G +S    G  R+     V   + R R + INE +  
Sbjct: 219 MDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKA 278

Query: 467 FME 475
             E
Sbjct: 279 LQE 281


>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 442

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 296 MDSYERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTV---ASRCRVELINEFLGR 466
           MD+ + S   S  G TST  +  G +S    G  R+     V   + R R + INE +  
Sbjct: 219 MDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKA 278

Query: 467 FME 475
             E
Sbjct: 279 LQE 281


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 275 VDFTAVHILIGRWIQGPLGGISWICRILVGIHFRLNYT 162
           VD+     L   W  GPL GI  + +I+ G+   ++YT
Sbjct: 24  VDYPTPSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYT 61


>At1g68150.1 68414.m07785 WRKY family transcription factor similar
           to DNA-binding protein ABF2 GI:1159879 from [Avena
           fatua]
          Length = 374

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 311 RSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRV 439
           R+ C + T     Q R  G+++  G    R  +RCTVA  C V
Sbjct: 226 RARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPV 268


>At1g18860.1 68414.m02348 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 480

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 311 RSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRV 439
           RS C + T     Q R  G++   G    R  +RCT+A+ C V
Sbjct: 182 RSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPV 224


>At1g77890.1 68414.m09078 expressed protein
          Length = 460

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 419 VASRCRVELINEFLGRFMESMGMGLARSWRSKSSFRT 529
           ++ RC  EL NE L +  E + + + +  +SK++FR+
Sbjct: 59  ISQRCWKELQNEKLAKLREKLQLQVEKLQQSKNTFRS 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,792
Number of Sequences: 28952
Number of extensions: 404240
Number of successful extensions: 1004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)