Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O04
         (998 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005A301A Cluster: PREDICTED: similar to SWI/SNF re...    34   6.6  
UniRef50_Q4RMY5 Cluster: Chromosome 6 SCAF15017, whole genome sh...    34   6.6  
UniRef50_Q96GM5-2 Cluster: Isoform 2 of Q96GM5 ; n=5; Euarchonto...    33   8.7  
UniRef50_Q96GM5 Cluster: SWI/SNF-related matrix-associated actin...    33   8.7  

>UniRef50_UPI00005A301A Cluster: PREDICTED: similar to SWI/SNF
           related, matrix associated, actin dependent regulator of
           chromatin, subfamily d, member 3 isoform 1 isoform 8;
           n=2; Canis lupus familiaris|Rep: PREDICTED: similar to
           SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           isoform 8 - Canis familiaris
          Length = 496

 Score = 33.9 bits (74), Expect = 6.6
 Identities = 26/81 (32%), Positives = 35/81 (43%)
 Frame = +2

Query: 215 SXPQNPXXNXPLYYXYSQPSXNRKXRLXXKILXQNVPXLIPXSQXYXXLIXFXLKLNATX 394
           S  QN     P     S+ +  RK  +  KIL Q +  L+P SQ Y  L+ F  KL+ T 
Sbjct: 66  SQAQNQGQPVPTAPARSRSAKRRK--MADKILPQRIRELVPESQAYMDLLAFERKLDQTI 123

Query: 395 NAQTVSXXQKCXXTPHKXXTK 457
             + V   Q+    P K   K
Sbjct: 124 MRKRVD-IQEALKRPMKQKRK 143


>UniRef50_Q4RMY5 Cluster: Chromosome 6 SCAF15017, whole genome
           shotgun sequence; n=3; Euteleostomi|Rep: Chromosome 6
           SCAF15017, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 621

 Score = 33.9 bits (74), Expect = 6.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 281 RKXRLXXKILXQNVPXLIPXSQXYXXLIXFXLKLNATXNAQTVSXXQKCXXTPHKXXT 454
           ++ ++  KIL Q +  L+P SQ Y  L+ F  KL+ T   + V   Q+    P K  T
Sbjct: 74  KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVD-IQEALKRPMKVAT 130


>UniRef50_Q96GM5-2 Cluster: Isoform 2 of Q96GM5 ; n=5;
           Euarchontoglires|Rep: Isoform 2 of Q96GM5 - Homo sapiens
           (Human)
          Length = 435

 Score = 33.5 bits (73), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 281 RKXRLXXKILXQNVPXLIPXSQXYXXLIXFXLKLNAT 391
           +K ++  KIL Q +  L+P SQ Y  L+ F  KL+ T
Sbjct: 85  KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 121


>UniRef50_Q96GM5 Cluster: SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily D
           member 1; n=125; Eumetazoa|Rep: SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily D member 1 - Homo sapiens (Human)
          Length = 476

 Score = 33.5 bits (73), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 281 RKXRLXXKILXQNVPXLIPXSQXYXXLIXFXLKLNAT 391
           +K ++  KIL Q +  L+P SQ Y  L+ F  KL+ T
Sbjct: 85  KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 121


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,036,100
Number of Sequences: 1657284
Number of extensions: 2173729
Number of successful extensions: 2633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2631
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 94306056537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)