Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O02
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    27   0.16 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.48 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 398 VDSVLDVVRKEAESCDCLQGIPT 466
           +DS+++++R   ++CD L G+ T
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDT 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 338 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES---CDCLQGIPTDTLARRRHRFRYGH 508
           G SG  ++   G  +   E +D+ L+ +R    S        GIP+ TL +R HR     
Sbjct: 396 GHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDT 455

Query: 509 P 511
           P
Sbjct: 456 P 456


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 127 LPELSSDLVAALTSLDMYDFPHFVLFM 47
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 358  VAGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 251
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 713 IHTHIRRPEPPGVADHVRRDXVXAVPR-TAERRP 811
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 713 IHTHIRRPEPPGVADHVRRDXVXAVPR-TAERRP 811
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 713 IHTHIRRPEPPGVADHVRRDXVXAVPR 793
           ++ H R P+   +A  VRR  +  +PR
Sbjct: 325 LNVHFRSPQTHVMAPWVRRVFIHVLPR 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 483  RRASVSVGIPWRQSHDSASFRTTSKT 406
            RR   + G+P +  HD+     TS+T
Sbjct: 1072 RRQHTAEGVPEQPPHDTTCTTLTSQT 1097


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,555
Number of Sequences: 438
Number of extensions: 4252
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)