SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O01
         (855 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr...    95   3e-18
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste...    91   2e-17
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R...    59   2e-07
UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia ja...    46   0.002
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ...    38   0.24 
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;...    34   5.3  

>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
           flavoprotein 1, mitochondrial precursor; n=215; cellular
           organisms|Rep: NADH dehydrogenase [ubiquinone]
           flavoprotein 1, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 464

 Score = 94.7 bits (225), Expect = 3e-18
 Identities = 64/208 (30%), Positives = 81/208 (38%)
 Frame = +3

Query: 189 TQXPXKNNXGPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXLXGXXXXXXXXKXS 368
           T  P K + G      R   N +G+  WR KG+  RG  + TKEI L G        K S
Sbjct: 24  TTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTS 83

Query: 369 XLXXXXXXXXXXXXXWSXXXNPSNGRPKXXVVNXXKGXPVXXKNRKXXLHNPXKLVEGXL 548
            L             WS    PS+GRPK  VVN  +G P   K+R+   H+P KL+EG L
Sbjct: 84  GLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCL 143

Query: 549 FAGRPMGAQPXIXLXXXVXXXXNXXXCXLLLLXAXQXXPXXXKTLXGPGYXFXNFXXPGV 728
             GR MGA+             N      + +          K   G GY F  F   G 
Sbjct: 144 VGGRAMGARAAYIYIR--GEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGA 201

Query: 729 XXLTXXXEGTAPLXSLXGQXXXPXXXTP 812
                  E TA + S+ G+   P    P
Sbjct: 202 GAYICGEE-TALIESIEGKQGKPRLKPP 228


>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
           melanogaster|Rep: CG11423-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 702

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 52/133 (39%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
 Frame = +3

Query: 177 PXXQTQXPX-KNNXGPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXLXGXXXXXX 353
           P   T  P  K   GP A   R   N +G+  WR K A  RG  + TKEI   G      
Sbjct: 242 PPPGTPPPQTKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVN 301

Query: 354 XXKXSXLXXXXXXXXXXXXXWSXXXNPSNGRPKXXVVNXXKGXPVXXKNRKXXLHNPXKL 533
             K S L             WS    P +GRPK  VVN  +G P   K+R+   H+P KL
Sbjct: 302 EIKTSGLRGRGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKL 361

Query: 534 VEGXLFAGRPMGA 572
           VEG L AGR MGA
Sbjct: 362 VEGCLIAGRAMGA 374


>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
           CG8102-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 481

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
 Frame = +3

Query: 204 KNNXGPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXLXGXXXXXXXXKXSXLXXX 383
           K   GP     R   N +G+  WR  GA  RG    T E+   G          S L   
Sbjct: 52  KTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGR 111

Query: 384 XXXXXXXXXXWSXXXNPSNGR-PKXXVVNXXKGXPVXXKNRKXXLHNPXKLVEGXLFAGR 560
                     W       + + PK  +VN  +G P   K+R    H P KL+EG L  G 
Sbjct: 112 GGAGFYAGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGV 171

Query: 561 PMG 569
            MG
Sbjct: 172 AMG 174


>UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia
           japonica|Rep: NADH dehydrogenase - Griffithsia japonica
           (Red alga)
          Length = 170

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
 Frame = +3

Query: 216 GPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXLXGXXXXXXXXKX-SXLXXXXXX 392
           G  +   R   N +    WR KGA  RG   +TK++   G        K           
Sbjct: 55  GGLSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGAP 114

Query: 393 XXXXXXXWSXXXNPS-NGRPKXXVVNXXKGXPVXXKNRKXXLHNPXKLVEGXLFAG 557
                  +S   + S +GRP   VVN  +  P   K+R+    +P KLVEG L  G
Sbjct: 115 GFPSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170


>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
           n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
           subunit F - Rickettsia felis (Rickettsia azadi)
          Length = 422

 Score = 38.3 bits (85), Expect = 0.24
 Identities = 31/108 (28%), Positives = 38/108 (35%)
 Frame = +3

Query: 249 NXFGQXXWRXKGAXPRGXXFLTKEIXLXGXXXXXXXXKXSXLXXXXXXXXXXXXXWSXXX 428
           N  GQ     K +  RG    TK +   G        K S L             WS   
Sbjct: 11  NLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFSTGMKWSFMP 70

Query: 429 NPSNGRPKXXVVNXXKGXPVXXKNRKXXLHNPXKLVEGXLFAGRPMGA 572
             S  +P   VVN  +  P   K+R      P KL+EG L A   +GA
Sbjct: 71  KNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGA 117


>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
           n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
           subunit - Acidobacteria bacterium (strain Ellin345)
          Length = 439

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 414 WSXXXNPSNGRPKXXVVNXXKGXPVXXKNRKXXLHNPXKLVEGXLFAGRPMGAQ 575
           WS     S  +PK  + N  +  P   K+R    H+P  ++EG + AG  +GA+
Sbjct: 71  WSFVPKES-AKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAK 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,700,197
Number of Sequences: 1657284
Number of extensions: 3750394
Number of successful extensions: 2522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2519
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -