Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O01
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)                61   1e-09

>SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)
          Length = 369

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 34/93 (36%), Positives = 43/93 (46%)
 Frame = +3

Query: 297 GXXFLTKEIXLXGXXXXXXXXKXSXLXXXXXXXXXXXXXWSXXXNPSNGRPKXXVVNXXK 476
           G  + TKEI L G          S L             W     PS+GRPK  VVN  +
Sbjct: 1   GDWYKTKEIILKGPDWILKEITTSGLRGRGGAGFPTGMKWGFMNKPSDGRPKYLVVNADE 60

Query: 477 GXPVXXKNRKXXLHNPXKLVEGXLFAGRPMGAQ 575
           G P   K+R+   ++P KL+EG L AG  MGA+
Sbjct: 61  GEPGTCKDREIMRNDPHKLIEGCLVAGASMGAR 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,650,184
Number of Sequences: 59808
Number of extensions: 112296
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)