BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O01 (855 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa s... 67 1e-11 >At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from {Homo sapiens} SP|P49821, {Bos taurus} SP|P25708, {Aspergillus niger} SP|Q92406; contains Pfam profile PF01512: Respiratory-chain NADH dehydrogenase 51 Kd subunit Length = 486 Score = 67.3 bits (157), Expect = 1e-11 Identities = 44/141 (31%), Positives = 55/141 (39%) Frame = +3 Query: 150 AXXVNNXPVPXXQTQXPXKNNXGPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXL 329 A + P P P K + G R N +G KGA RG TK++ L Sbjct: 34 AASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVL 93 Query: 330 XGXXXXXXXXKXSXLXXXXXXXXXXXXXWSXXXNPSNGRPKXXVVNXXKGXPVXXKNRKX 509 G K S L WS S+GRP VVN + P K+R+ Sbjct: 94 KGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREI 153 Query: 510 XLHNPXKLVEGXLFAGRPMGA 572 H+P KL+EG L AG M A Sbjct: 154 MRHDPHKLLEGCLIAGVGMRA 174 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,253,741 Number of Sequences: 28952 Number of extensions: 83645 Number of successful extensions: 57 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 57 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1989897600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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