Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O01
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa s...    67   1e-11

>At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa
           subunit, mitochondrial, putative similar to
           NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from
           {Homo sapiens} SP|P49821, {Bos taurus} SP|P25708,
           {Aspergillus niger} SP|Q92406; contains Pfam profile
           PF01512: Respiratory-chain NADH dehydrogenase 51 Kd
           subunit
          Length = 486

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 44/141 (31%), Positives = 55/141 (39%)
 Frame = +3

Query: 150 AXXVNNXPVPXXQTQXPXKNNXGPXAXTXRXXXNXFGQXXWRXKGAXPRGXXFLTKEIXL 329
           A   +  P P      P K + G      R   N +G      KGA  RG    TK++ L
Sbjct: 34  AASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVL 93

Query: 330 XGXXXXXXXXKXSXLXXXXXXXXXXXXXWSXXXNPSNGRPKXXVVNXXKGXPVXXKNRKX 509
            G        K S L             WS     S+GRP   VVN  +  P   K+R+ 
Sbjct: 94  KGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREI 153

Query: 510 XLHNPXKLVEGXLFAGRPMGA 572
             H+P KL+EG L AG  M A
Sbjct: 154 MRHDPHKLLEGCLIAGVGMRA 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,253,741
Number of Sequences: 28952
Number of extensions: 83645
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)