BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_N24 (917 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 43 7e-05 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.043 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.075 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.075 SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 29 0.70 SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 29 0.70 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.2 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6 SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.8 SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.6 >SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 42.7 bits (96), Expect = 7e-05 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +1 Query: 304 LRSTIMREFXXXXXXXXXXXXXAXTVQFVSGCFMEKYDPTIKDXYTKXIXXDXSPCVXXX 483 +RST +RE+ A T+Q + F+++YDPTI+D Y K D + Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDV 60 Query: 484 LD 489 LD Sbjct: 61 LD 62 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 33.5 bits (73), Expect = 0.043 Identities = 24/75 (32%), Positives = 24/75 (32%) Frame = +2 Query: 602 TPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXPXAXXXARTXTX 781 TPP P P P PS PP P PP P A A Sbjct: 414 TPPVPTP-PSLPPSAPPSLPPSAPPSL--PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470 Query: 782 PAXPXXPPXPAXXXA 826 PA P PP PA A Sbjct: 471 PAAPAPPPAPAPAPA 485 Score = 33.1 bits (72), Expect = 0.057 Identities = 16/57 (28%), Positives = 19/57 (33%) Frame = +2 Query: 578 PPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXP 748 PP+ P P P +P P+ PP P G PP PP P Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476 Score = 32.3 bits (70), Expect = 0.099 Identities = 26/102 (25%), Positives = 28/102 (27%), Gaps = 3/102 (2%) Frame = +2 Query: 566 RGXXPPAXPXXPTPPXPXPSPXRSGRXX---PSXPPXXPXXXRXXXXXXGXAXXPPXPPX 736 R PP P P P S R P+ PP P G A PP Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417 Query: 737 XXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862 P A P+ P P P A P P P Sbjct: 418 PTPPSLPPSAPPSLPPSAP--PSLPMGAPAAPPLPPSAPIAP 457 Score = 28.7 bits (61), Expect = 1.2 Identities = 21/89 (23%), Positives = 22/89 (24%), Gaps = 1/89 (1%) Frame = +2 Query: 539 AXPXXXAPXRGXXPPAXPXXPTP-PXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAX 715 A P + P P P P P P P P P P Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288 Query: 716 XPPXPPXXXXPXAXXXARTXTXPAXPXXP 802 PP PP A A P P P Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPP 317 Score = 25.8 bits (54), Expect = 8.6 Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 6/97 (6%) Frame = +2 Query: 581 PAXPXXPTPPXPXPSPXRSG------RXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXX 742 PA PP P PS S + P PP R + PP Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341 Query: 743 XPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXP 853 P + P PP P A + P P Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 32.7 bits (71), Expect = 0.075 Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%) Frame = +2 Query: 560 PXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXP-PXXPXXXRXXXXXXGXAXXPPXP-P 733 P PP PP P PS PS P P PP P P Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136 Query: 734 XXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862 P PA PP P A P P P Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179 Score = 31.1 bits (67), Expect = 0.23 Identities = 27/110 (24%), Positives = 30/110 (27%), Gaps = 2/110 (1%) Frame = +2 Query: 539 AXPXXXAPXRGXXPPAXPXXPTPPXPXPSPXRS-GRXXPSXPPXXPXXXRXXXXXXGXAX 715 A P P G P P PP P PS + + PP A Sbjct: 1129 AAPPVPVPS-GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187 Query: 716 XPPXPPXXXXPXAXXXA-RTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862 PP PP P + P PP P L P P P Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237 Score = 30.3 bits (65), Expect = 0.40 Identities = 25/102 (24%), Positives = 29/102 (28%) Frame = +2 Query: 557 APXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPX 736 AP P PP P PS PS P P + P PP Sbjct: 1006 APLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP- 1064 Query: 737 XXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862 P + + PA PP PA + P P P Sbjct: 1065 ---PVPAPSSEIPSIPAPSGAPPVPA-PSGIPPVPKPSVAAP 1102 Score = 25.8 bits (54), Expect = 8.6 Identities = 24/108 (22%), Positives = 25/108 (23%), Gaps = 2/108 (1%) Frame = +2 Query: 545 PXXXAPXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPP 724 P P P P PP P PS P P PP Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151 Query: 725 XP-PXXXXPXAXXXARTXTXPA-XPXXPPXPAXXXALAXXPGPXPXTP 862 P P P PA PP P + P P P Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 32.7 bits (71), Expect = 0.075 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +2 Query: 557 APXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXP 673 AP PP P PP P P P +G P PP P Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783 >SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr 2|||Manual Length = 185 Score = 29.5 bits (63), Expect = 0.70 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 376 TVQFVSGCFMEKYDPTIKDXYTKXI 450 TVQ+V F+E Y PTI++ ++K I Sbjct: 23 TVQYVENHFVESYYPTIENTFSKNI 47 >SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 638 Score = 29.5 bits (63), Expect = 0.70 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -3 Query: 150 FHVN*NNSNCIALITLKTNA-EHNFHSTDVINTSLVPHEQQVG 25 FH + NN C+AL T + F++ D TSL H QVG Sbjct: 416 FHTS-NNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVG 457 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 28.7 bits (61), Expect = 1.2 Identities = 16/51 (31%), Positives = 19/51 (37%) Frame = +2 Query: 719 PPXPPXXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTPXXG 871 PP PP P A + T P P PA A++ PG P G Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP--PAGATAISGNPGMPAPVPLTG 1930 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 28.3 bits (60), Expect = 1.6 Identities = 22/75 (29%), Positives = 26/75 (34%) Frame = +2 Query: 578 PPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXPXAX 757 PP+ P PTP P S PS PP P + PP P P A Sbjct: 124 PPSAPAPPTPQSEL-RPPTSAPPRPSIPPPSPASAPPI-----PSKAPPI-PSSLPPPAQ 176 Query: 758 XXARTXTXPAXPXXP 802 A + P+ P P Sbjct: 177 PAAPVKSPPSAPSLP 191 Score = 26.6 bits (56), Expect = 4.9 Identities = 29/110 (26%), Positives = 30/110 (27%), Gaps = 1/110 (0%) Frame = +2 Query: 545 PXXXAPXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPP 724 P P PP P P P PSP S PS P P PP Sbjct: 128 PAPPTPQSELRPPTSAP-PRPSIPPPSP-ASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185 Query: 725 XPPXXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPG-PXPXTPXXG 871 P P A P P PP P +A P P G Sbjct: 186 SAP--SLPSA-------VPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226 >SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 743 Score = 27.5 bits (58), Expect = 2.8 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -2 Query: 379 QSTHSFRPHPNPTRPL*IRA 320 Q THS RP PN + PL +R+ Sbjct: 589 QQTHSSRPTPNASSPLDVRS 608 >SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1841 Score = 25.8 bits (54), Expect = 8.6 Identities = 14/51 (27%), Positives = 16/51 (31%) Frame = +2 Query: 581 PAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPP 733 P PTPP P P P ++ S P PP PP Sbjct: 899 PTIITHPTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPP 949 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,515,172 Number of Sequences: 5004 Number of extensions: 41734 Number of successful extensions: 156 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 466510270 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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