Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N24
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 43 7e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.043
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.075
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.075
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 29 0.70
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 29 0.70
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.6
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 42.7 bits (96), Expect = 7e-05
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 304 LRSTIMREFXXXXXXXXXXXXXAXTVQFVSGCFMEKYDPTIKDXYTKXIXXDXSPCVXXX 483
+RST +RE+ A T+Q + F+++YDPTI+D Y K D +
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDV 60
Query: 484 LD 489
LD
Sbjct: 61 LD 62
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.043
Identities = 24/75 (32%), Positives = 24/75 (32%)
Frame = +2
Query: 602 TPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXPXAXXXARTXTX 781
TPP P P P PS PP P PP P A A
Sbjct: 414 TPPVPTP-PSLPPSAPPSLPPSAPPSL--PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 782 PAXPXXPPXPAXXXA 826
PA P PP PA A
Sbjct: 471 PAAPAPPPAPAPAPA 485
Score = 33.1 bits (72), Expect = 0.057
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +2
Query: 578 PPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXP 748
PP+ P P P +P P+ PP P G PP PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 32.3 bits (70), Expect = 0.099
Identities = 26/102 (25%), Positives = 28/102 (27%), Gaps = 3/102 (2%)
Frame = +2
Query: 566 RGXXPPAXPXXPTPPXPXPSPXRSGRXX---PSXPPXXPXXXRXXXXXXGXAXXPPXPPX 736
R PP P P P S R P+ PP P G A PP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 737 XXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862
P A P+ P P P A P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAP--PSLPMGAPAAPPLPPSAPIAP 457
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/89 (23%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Frame = +2
Query: 539 AXPXXXAPXRGXXPPAXPXXPTP-PXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAX 715
A P + P P P P P P P P P P
Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288
Query: 716 XPPXPPXXXXPXAXXXARTXTXPAXPXXP 802
PP PP A A P P P
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Frame = +2
Query: 581 PAXPXXPTPPXPXPSPXRSG------RXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXX 742
PA PP P PS S + P PP R + PP
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Query: 743 XPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXP 853
P + P PP P A + P P
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.075
Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Frame = +2
Query: 560 PXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXP-PXXPXXXRXXXXXXGXAXXPPXP-P 733
P PP PP P PS PS P P PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 734 XXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862
P PA PP P A P P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/110 (24%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Frame = +2
Query: 539 AXPXXXAPXRGXXPPAXPXXPTPPXPXPSPXRS-GRXXPSXPPXXPXXXRXXXXXXGXAX 715
A P P G P P PP P PS + + PP A
Sbjct: 1129 AAPPVPVPS-GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Query: 716 XPPXPPXXXXPXAXXXA-RTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862
PP PP P + P PP P L P P P
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 30.3 bits (65), Expect = 0.40
Identities = 25/102 (24%), Positives = 29/102 (28%)
Frame = +2
Query: 557 APXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPX 736
AP P PP P PS PS P P + P PP
Sbjct: 1006 APLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP- 1064
Query: 737 XXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTP 862
P + + PA PP PA + P P P
Sbjct: 1065 ---PVPAPSSEIPSIPAPSGAPPVPA-PSGIPPVPKPSVAAP 1102
Score = 25.8 bits (54), Expect = 8.6
Identities = 24/108 (22%), Positives = 25/108 (23%), Gaps = 2/108 (1%)
Frame = +2
Query: 545 PXXXAPXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPP 724
P P P P PP P PS P P PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 725 XP-PXXXXPXAXXXARTXTXPA-XPXXPPXPAXXXALAXXPGPXPXTP 862
P P P PA PP P + P P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.075
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 557 APXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXP 673
AP PP P PP P P P +G P PP P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 376 TVQFVSGCFMEKYDPTIKDXYTKXI 450
TVQ+V F+E Y PTI++ ++K I
Sbjct: 23 TVQYVENHFVESYYPTIENTFSKNI 47
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 150 FHVN*NNSNCIALITLKTNA-EHNFHSTDVINTSLVPHEQQVG 25
FH + NN C+AL T + F++ D TSL H QVG
Sbjct: 416 FHTS-NNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVG 457
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 719 PPXPPXXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPGPXPXTPXXG 871
PP PP P A + T P P PA A++ PG P G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP--PAGATAISGNPGMPAPVPLTG 1930
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 26/75 (34%)
Frame = +2
Query: 578 PPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPPXXXXPXAX 757
PP+ P PTP P S PS PP P + PP P P A
Sbjct: 124 PPSAPAPPTPQSEL-RPPTSAPPRPSIPPPSPASAPPI-----PSKAPPI-PSSLPPPAQ 176
Query: 758 XXARTXTXPAXPXXP 802
A + P+ P P
Sbjct: 177 PAAPVKSPPSAPSLP 191
Score = 26.6 bits (56), Expect = 4.9
Identities = 29/110 (26%), Positives = 30/110 (27%), Gaps = 1/110 (0%)
Frame = +2
Query: 545 PXXXAPXRGXXPPAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPP 724
P P PP P P P PSP S PS P P PP
Sbjct: 128 PAPPTPQSELRPPTSAP-PRPSIPPPSP-ASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Query: 725 XPPXXXXPXAXXXARTXTXPAXPXXPPXPAXXXALAXXPG-PXPXTPXXG 871
P P A P P PP P +A P P G
Sbjct: 186 SAP--SLPSA-------VPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 379 QSTHSFRPHPNPTRPL*IRA 320
Q THS RP PN + PL +R+
Sbjct: 589 QQTHSSRPTPNASSPLDVRS 608
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +2
Query: 581 PAXPXXPTPPXPXPSPXRSGRXXPSXPPXXPXXXRXXXXXXGXAXXPPXPP 733
P PTPP P P P ++ S P PP PP
Sbjct: 899 PTIITHPTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPP 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,172
Number of Sequences: 5004
Number of extensions: 41734
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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