BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_N22 (846 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 233 2e-62 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 132 5e-32 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 130 3e-31 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 122 8e-29 SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.9 SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5 SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.4 SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 5.8 SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 7.7 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 233 bits (570), Expect = 2e-62 Identities = 100/132 (75%), Positives = 116/132 (87%) Frame = +1 Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273 MREIVHIQAGQCGNQ+GA FW I+DEHG+D YHG S+ Q ER+NVY+NEA+GGKYV Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60 Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453 PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120 Query: 454 RKEAESCDCLQG 489 R+EAE+CD LQG Sbjct: 121 RREAEACDALQG 132 Score = 94.7 bits (225), Expect = 1e-20 Identities = 45/76 (59%), Positives = 52/76 (68%) Frame = +2 Query: 479 ASRGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLS 658 A +GFQ KIREEYPDR+M T+SV P+PK SDTVVEPYNA LS Sbjct: 129 ALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLS 188 Query: 659 VHQLVENTDETYCIDN 706 +HQLVEN+DET+CIDN Sbjct: 189 MHQLVENSDETFCIDN 204 Score = 28.7 bits (61), Expect = 1.1 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 714 LYDICFRTLKLSTPTYGDLNHL 779 L I TLK+ +P+Y DLNHL Sbjct: 207 LSSIFANTLKIKSPSYDDLNHL 228 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 132 bits (320), Expect = 5e-32 Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 2/134 (1%) Frame = +1 Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLER--INVYYNEASGGK 267 MREI+ I GQ G QIG WE+ EHGI P + ++ Q + +++E GK Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60 Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447 YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120 Query: 448 VVRKEAESCDCLQG 489 +R+ A++C LQG Sbjct: 121 KIRRIADNCSGLQG 134 Score = 47.2 bits (107), Expect = 3e-06 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = +2 Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706 ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DN Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDN 206 Score = 28.3 bits (60), Expect = 1.4 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 717 YDICFRTLKLSTPTYGDLNHL 779 YDIC R L + P+Y +LN L Sbjct: 210 YDICRRNLDIERPSYENLNRL 230 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 130 bits (313), Expect = 3e-31 Identities = 59/138 (42%), Positives = 86/138 (62%), Gaps = 6/138 (4%) Frame = +1 Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDP------TSAYHGDSDLQLERINVYYNEA 255 MRE++ + GQ G QIG WE+ EHGI P S H ++ + +++E Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60 Query: 256 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 435 GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120 Query: 436 SVLDVVRKEAESCDCLQG 489 SVL+ +R+ A++C LQG Sbjct: 121 SVLERIRRMADNCSGLQG 138 Score = 50.8 bits (116), Expect = 2e-07 Identities = 21/51 (41%), Positives = 35/51 (68%) Frame = +2 Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706 ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DN Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDN 210 Score = 29.9 bits (64), Expect = 0.47 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 717 YDICFRTLKLSTPTYGDLNHL 779 YDIC R L + PTY +LN L Sbjct: 214 YDICRRNLDIERPTYENLNRL 234 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 122 bits (293), Expect = 8e-29 Identities = 51/133 (38%), Positives = 89/133 (66%), Gaps = 2/133 (1%) Frame = +1 Query: 97 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYVP 276 REI+ +QAGQCGNQIG++FW+ + EHGI P + ++R +V++ ++ +Y+P Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62 Query: 277 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 450 RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+ Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121 Query: 451 VRKEAESCDCLQG 489 + +EA+ D L+G Sbjct: 122 IDREADGSDSLEG 134 Score = 51.2 bits (117), Expect = 2e-07 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = +2 Query: 554 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706 ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDN 207 >SPBC19G7.16 |iws1||transcription elongation factor complex subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 27.9 bits (59), Expect = 1.9 Identities = 10/34 (29%), Positives = 22/34 (64%) Frame = +1 Query: 133 NQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERI 234 N++G E+++++ +DPT A + DLQ++ + Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166 >SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual Length = 234 Score = 27.5 bits (58), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 397 AKGHYTEGAELVDSVLDVVRKEAESCDCLQGIP 495 A+GH G ELV + D +RK++E+ L+ P Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALEVCP 215 >SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizosaccharomyces pombe|chr 1|||Manual Length = 506 Score = 26.6 bits (56), Expect = 4.4 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 328 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 429 GP+G +F P F+F +G NW+ Y E A L Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190 >SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 26.2 bits (55), Expect = 5.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 470 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 333 ++A+ RTTS T+ +PS L P P + S R+ CPK Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432 >SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1063 Score = 25.8 bits (54), Expect = 7.7 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = +1 Query: 349 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 480 RP +F G++ G + E D ++ + + ESCDC Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,969,151 Number of Sequences: 5004 Number of extensions: 56049 Number of successful extensions: 174 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 170 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 418457710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -