Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N22
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 264 7e-71
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 260 6e-70
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 260 6e-70
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 259 2e-69
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 258 3e-69
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 258 3e-69
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 257 6e-69
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 256 1e-68
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 256 1e-68
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 132 2e-31
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 132 2e-31
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 130 9e-31
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 129 2e-30
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 129 2e-30
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 127 1e-29
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 127 1e-29
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 108 5e-24
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 107 7e-24
At4g37190.1 68417.m05265 expressed protein 35 0.059
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 30 1.7
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 2.9
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 29 5.1
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 29 5.1
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 28 9.0
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 9.0
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 264 bits (646), Expect = 7e-71
Identities = 114/133 (85%), Positives = 128/133 (96%), Gaps = 1/133 (0%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDS-DLQLERINVYYNEASGGKY 270
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPT Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 271 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 450
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 451 VRKEAESCDCLQG 489
VRKEAE+CDCLQG
Sbjct: 121 VRKEAENCDCLQG 133
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 155 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKLSTP++GDLNHL
Sbjct: 208 LYDICFRTLKLSTPSFGDLNHL 229
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 260 bits (638), Expect = 6e-70
Identities = 113/132 (85%), Positives = 126/132 (95%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPT Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+TP++GDLNHL
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 260 bits (638), Expect = 6e-70
Identities = 115/133 (86%), Positives = 126/133 (94%), Gaps = 1/133 (0%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDS-DLQLERINVYYNEASGGKY 270
MREI+HIQ GQCGNQIG+KFWE+I DEHGID T Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 271 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 450
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 451 VRKEAESCDCLQG 489
VRKEAE+CDCLQG
Sbjct: 121 VRKEAENCDCLQG 133
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 155 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKLSTP++GDLNHL
Sbjct: 208 LYDICFRTLKLSTPSFGDLNHL 229
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 259 bits (634), Expect = 2e-69
Identities = 115/132 (87%), Positives = 124/132 (93%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIGAKFWE+I EHGID T GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.0 bits (109), Expect = 8e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+ PT+GDLNHL
Sbjct: 207 LYDICFRTLKLANPTFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 258 bits (633), Expect = 3e-69
Identities = 113/132 (85%), Positives = 124/132 (93%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPT Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+TP++GDLNHL
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 258 bits (633), Expect = 3e-69
Identities = 113/132 (85%), Positives = 124/132 (93%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPT Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+TP++GDLNHL
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 257 bits (630), Expect = 6e-69
Identities = 115/132 (87%), Positives = 124/132 (93%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIGAKFWE+I DEHGID T Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+ DCLQG
Sbjct: 121 RKEAENSDCLQG 132
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.0 bits (109), Expect = 8e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+ PT+GDLNHL
Sbjct: 207 LYDICFRTLKLANPTFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 256 bits (628), Expect = 1e-68
Identities = 112/132 (84%), Positives = 125/132 (94%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIG+KFWE+++ EHGID T Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKLSTP++GDLNHL
Sbjct: 207 LYDICFRTLKLSTPSFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 256 bits (627), Expect = 1e-68
Identities = 111/132 (84%), Positives = 124/132 (93%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYV 273
MREI+HIQ GQCGNQIGAKFWE++ EHGID T Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 274 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 453
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 454 RKEAESCDCLQG 489
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LSVHQLVEN DE +DN
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
LYDICFRTLKL+TP++GDLNHL
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHL 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 781 LSLTMSGATTCLXFPGQ 831
+S TMSG T CL FPGQ
Sbjct: 229 ISATMSGVTCCLRFPGQ 245
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 132 bits (320), Expect = 2e-31
Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MREI+ I GQ G Q+G WE+ EHGI P D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
VRK A++C LQG
Sbjct: 121 RVRKLADNCTGLQG 134
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 156 RLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLDIERPTYTNLNRL 230
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 132 bits (320), Expect = 2e-31
Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MREI+ I GQ G Q+G WE+ EHGI P D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
VRK A++C LQG
Sbjct: 121 RVRKLADNCTGLQG 134
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 156 RLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLDIERPTYTNLNRL 230
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 130 bits (315), Expect = 9e-31
Identities = 59/134 (44%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MREI+ I GQ G Q+G WE+ EHGI P DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 448 VVRKEAESCDCLQG 489
+RK A++C LQG
Sbjct: 121 RLRKLADNCTGLQG 134
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 593 YSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
+++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDN 206
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLDIERPTYSNLNRL 230
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 129 bits (312), Expect = 2e-30
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MRE + I GQ G Q+G WE+ EHGI P GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 156 RLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLNIERPTYTNLNRL 230
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 129 bits (312), Expect = 2e-30
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MRE + I GQ G Q+G WE+ EHGI P GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 156 RLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLNIERPTYTNLNRL 230
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 127 bits (306), Expect = 1e-29
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MRE + I GQ G Q+G WE+ EHGI P D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 156 RLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLSIERPTYTNLNRL 230
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 127 bits (306), Expect = 1e-29
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQL--ERINVYYNEASGGK 267
MRE + I GQ G Q+G WE+ EHGI P D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 268 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 447
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 448 VVRKEAESCDCLQG 489
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 554 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 156 RLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 714 LYDICFRTLKLSTPTYGDLNHL 779
+YDIC R+L + PTY +LN L
Sbjct: 209 IYDICRRSLSIERPTYTNLNRL 230
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 108 bits (259), Expect = 5e-24
Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Frame = +1
Query: 97 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYVP 276
REI+ +Q GQCGNQIG +FW+ + EHGI + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 277 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 450
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 451 VRKEAESCDCLQG 489
+ +EA+ D L+G
Sbjct: 122 IDREADGSDSLEG 134
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 557 IREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
+ + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN
Sbjct: 157 LNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 107 bits (258), Expect = 7e-24
Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Frame = +1
Query: 97 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTSAYHGDSDLQLERINVYYNEASGGKYVP 276
REI+ +Q GQCGNQIG +FW+ + EHGI + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 277 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 450
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 451 VRKEAESCDCLQG 489
+ +EA+ D L+G
Sbjct: 122 IDREADGSDSLEG 134
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 557 IREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAPLSVHQLVENTDETYCIDN 706
+ + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN
Sbjct: 157 LNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 94 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DPTS-AYHGDSDLQLERINVYYNEASG- 261
MREIV IQ G+ N +G+ FW + G+ DP S + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 262 GKYVPRAILVDLEP--GTMDS 318
Y PR + V+L+ GTM S
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 629 VVEPYNAPLSVHQLVENTDETYCIDNXXSLRYLLPHAKTIHTH 757
V+ N +HQ V+ DE +C+D ++R L +T+ H
Sbjct: 3 VLRVSNQSFKLHQQVQCKDEIFCLDQKVNVRRSLQVQETVEDH 45
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 427 LVDSVLDVVRKEAESCDCLQ 486
+++SV VVRKEAE+C+CLQ
Sbjct: 1 MINSV-GVVRKEAENCNCLQ 19
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = -1
Query: 399 GPVVAGAGLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 232
GP G G +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 231 ALQLQVRVPMVGTG 190
+LQLQV++ + +G
Sbjct: 391 SLQLQVQIMSMASG 404
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = -1
Query: 399 GPVVAGAGLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 232
GP G G +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 231 ALQLQVRVPMVGTG 190
+LQLQV++ + +G
Sbjct: 391 SLQLQVQIMSMASG 404
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 115 QAGQCGNQIGAKFWEIISDEHGIDPTSAYHG 207
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 264 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 85
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,204
Number of Sequences: 28952
Number of extensions: 317703
Number of successful extensions: 991
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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