Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N21
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 180 1e-45
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 180 2e-45
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 3e-38
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 146 3e-35
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 78 1e-14
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 4e-13
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 7e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.100
SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81) 31 1.6
SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3) 31 1.6
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 30 2.1
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 29 3.8
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 5.0
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 5.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6) 28 8.7
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 180 bits (438), Expect = 1e-45
Identities = 82/108 (75%), Positives = 94/108 (87%)
Frame = +2
Query: 209 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 388
YVAF+DTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +
Sbjct: 41 YVAFSDTERLIGDAAKNQVAMNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGER 100
Query: 389 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +AV+TVPA
Sbjct: 101 PKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTVPA 148
Score = 101 bits (242), Expect = 8e-22
Identities = 49/57 (85%), Positives = 52/57 (91%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGXG 698
P YF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLG G
Sbjct: 147 PAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGG 203
Score = 48.0 bits (109), Expect = 1e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 130 YSCVGVFQHGKVEIIANDQGQQ 195
YSCVGVFQHGKVEIIANDQG +
Sbjct: 15 YSCVGVFQHGKVEIIANDQGNR 36
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +1
Query: 691 GAGTFDVSILTIEDGIFXGEIPAGDXXLG 777
G GTFDVS+LTIEDGIF + AGD LG
Sbjct: 201 GGGTFDVSVLTIEDGIFEVKSTAGDTHLG 229
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 746 VKSPPATPXWGGEDFDNRXVXXFVXXFXXXXKXTXLPXR 862
VKS GGEDFDN+ V FV F K P +
Sbjct: 219 VKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNK 257
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 87 MAKAPAVGIDLGTT 128
MAK PAVGIDLGTT
Sbjct: 1 MAKTPAVGIDLGTT 14
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 180 bits (437), Expect = 2e-45
Identities = 83/108 (76%), Positives = 96/108 (88%)
Frame = +2
Query: 209 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 388
YV FTDTERL+GDAAKNQVA+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD K
Sbjct: 41 YVGFTDTERLVGDAAKNQVALNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNK 100
Query: 389 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
PKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+ V +AVITVPA
Sbjct: 101 PKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITVPA 148
Score = 104 bits (250), Expect = 8e-23
Identities = 48/57 (84%), Positives = 53/57 (92%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGXG 698
P YFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLG G
Sbjct: 147 PAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGG 203
Score = 45.2 bits (102), Expect = 7e-05
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1
Query: 130 YSCVGVFQHGKVEIIANDQGQQ 195
YSCVGVFQ+GKVEIIANDQG +
Sbjct: 15 YSCVGVFQNGKVEIIANDQGNR 36
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 691 GAGTFDVSILTIEDG-IFXGEIPAGDXXLG 777
G GTFDVSILTI+DG +F + AGD LG
Sbjct: 201 GGGTFDVSILTIDDGSLFEVKSTAGDTHLG 230
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +2
Query: 746 VKSPPATPXWGGEDFDNRXVXXFVXXFXXXXK 841
VKS GGEDFDNR V FV F K
Sbjct: 220 VKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYK 251
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 87 MAKAPAVGIDLGTT 128
M KAPA+GIDLGTT
Sbjct: 1 MGKAPAIGIDLGTT 14
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 156 bits (378), Expect = 3e-38
Identities = 84/133 (63%), Positives = 94/133 (70%), Gaps = 25/133 (18%)
Frame = +2
Query: 209 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 388
YVAFTD ERL+GDAAKNQVAMNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+
Sbjct: 41 YVAFTDEERLVGDAAKNQVAMNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGR 100
Query: 389 PKIKVAYKGEDKTFFPEEV-------------------------SSMVLTKMKETAEAYL 493
PK+KV YKGE KTFF EEV SSMVL KMKETAEAYL
Sbjct: 101 PKVKVEYKGETKTFFAEEVVNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYL 160
Query: 494 GKTVQNAVITVPA 532
G V +AV+TVPA
Sbjct: 161 GCKVTDAVVTVPA 173
Score = 104 bits (249), Expect = 1e-22
Identities = 51/57 (89%), Positives = 51/57 (89%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGXG 698
P YFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLG G
Sbjct: 240 PAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGG 296
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 440 EVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
++SSMVL KMKETAEAYLG V +AV+TVPA
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPA 241
Score = 48.0 bits (109), Expect = 1e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 130 YSCVGVFQHGKVEIIANDQGQQ 195
YSCVGVFQHGKVEIIANDQG +
Sbjct: 15 YSCVGVFQHGKVEIIANDQGNR 36
Score = 39.5 bits (88), Expect = 0.004
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 691 GAGTFDVSILTIEDGIFXGEIPAGDXXLG 777
G GTFDVS+L+IEDGIF + GD LG
Sbjct: 294 GGGTFDVSVLSIEDGIFEVKSTHGDTHLG 322
Score = 36.3 bits (80), Expect = 0.033
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAG 575
P YFNDSQRQATKDAG
Sbjct: 172 PAYFNDSQRQATKDAG 187
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 746 VKSPPATPXWGGEDFDNRXVXXFVXXFXXXXKXTXLPXR 862
VKS GGEDFDN V FV F K P +
Sbjct: 312 VKSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNK 350
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 87 MAKAPAVGIDLGTT 128
M KAPA+GIDLGTT
Sbjct: 1 MTKAPAIGIDLGTT 14
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 146 bits (353), Expect = 3e-35
Identities = 71/109 (65%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Frame = +2
Query: 209 YVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG 385
YVAFT+ ERLIGD AKNQ+ NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV
Sbjct: 738 YVAFTEEGERLIGDGAKNQLTTNPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNK 797
Query: 386 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
KP ++V K E KTF EE+S+MVLTKMKETAEAYLGK V +AV+TVPA
Sbjct: 798 KPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTHAVVTVPA 846
Score = 96.3 bits (229), Expect = 3e-20
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGXG 698
P YFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLG G
Sbjct: 845 PAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGG 900
Score = 42.3 bits (95), Expect = 5e-04
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +1
Query: 130 YSCVGVFQHGKVEIIANDQGQQ 195
YSCVGVF++G+VEIIANDQG +
Sbjct: 712 YSCVGVFKNGRVEIIANDQGNR 733
Score = 36.3 bits (80), Expect = 0.033
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 691 GAGTFDVSILTIEDGIFXGEIPAGDXXLG 777
G GTFDVS+LTI++G+F GD LG
Sbjct: 898 GGGTFDVSLLTIDNGVFEVVATNGDTHLG 926
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 77.8 bits (183), Expect = 1e-14
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +2
Query: 212 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGK 388
VAFTD L+G+ A +Q +NP NTI+DAKR IG+ F + K + F V +D G
Sbjct: 71 VAFTDKGVLVGEKALSQAEINPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGN 130
Query: 389 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
V KG PEE+ V+ K++ AE L TV AV++VPA
Sbjct: 131 AGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSVPA 178
Score = 66.5 bits (155), Expect = 3e-11
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGXGYL 704
P F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLG G L
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTL 234
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 691 GAGTFDVSILTIEDGIFXGEIPAGDXXLG 777
G GT DVS+L I+ G+F AG+ LG
Sbjct: 230 GGGTLDVSLLNIQGGMFVTMAMAGNNRLG 258
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 72.5 bits (170), Expect = 4e-13
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +2
Query: 272 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 448
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 449 SMVLTKMKETAEAYLGKTVQNAVITVPA 532
+M+ T++K TAE L V + VI+VP+
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPS 205
Score = 51.6 bits (118), Expect = 8e-07
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLIFDLGXG 698
P Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+ D+G
Sbjct: 204 PSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFVDIGHS 263
Query: 699 YLR 707
L+
Sbjct: 264 SLQ 266
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 58.4 bits (135), Expect = 7e-09
Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 26/74 (35%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIA 635
P +FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIA
Sbjct: 46 PAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIA 105
Query: 636 YGLDKK--GTGERN 671
YGLDK G ERN
Sbjct: 106 YGLDKARGGKAERN 119
Score = 52.0 bits (119), Expect = 6e-07
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = +2
Query: 395 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 532
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPA 47
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLG 692
P +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G
Sbjct: 113 PPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMG 171
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 389 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 529
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 34.7 bits (76), Expect = 0.100
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 691 GAGTFDVSILTIEDGIFXGEIPAGDXXLG 777
G GTFD+SIL I+ G+F + GD LG
Sbjct: 8 GGGTFDISILEIQKGVFEVKATNGDTYLG 36
>SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 974
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 442 SQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDKPQKM 570
S HG Y +GN + N A C + ++ TL++ P+K+
Sbjct: 405 SMLHGKYVKDGNLEEVPKGNAAACRDNEDPISRATLRNPPRKV 447
>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 737 IPSSMVRMDTSKVPAPEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTC 570
IPSS+V ++ ++P+ V + S+L + SSS F +S+ + + TC
Sbjct: 319 IPSSLVTRESDRIPSSFVAFESDGIPSSLVTREFDGLSSSLFACESDGIPSSFVTC 374
>SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3)
Length = 156
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 410 KGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPALLQ*LSKTSHKRC--RYHL 583
KG D S+ +++ K LGK Q +I P LL + K S + C R H
Sbjct: 48 KGRDVLRTAIRCLSLYISRKKHCITNRLGKAKQEKIIMNPPLLANIHKQSTQLCPKRLHD 107
Query: 584 WLERSPN 604
L SPN
Sbjct: 108 VLRHSPN 114
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 803 PXDCQSPHLPXWXSPAGISPSKIPSSMVRMDTSKVPAPEVKDKY 672
P C+S +P SP IPSS+V ++ +P+P V K+
Sbjct: 92 PVACESDGIPS--SPVACESDGIPSSLVACESDGIPSPLVACKF 133
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 54 RTSNKTD*KYKMAKAPAVGIDLGTTXLLRWCLPAREGG 167
R++ K+D +K KAP G G + RW PA E G
Sbjct: 558 RSAEKSDAIHKEKKAPRGGRSGGPSQRKRWTAPAEEDG 595
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 293 RILCCWGSSPPGSWRH 246
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 293 RILCCWGSSPPGSWRH 246
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 788 SPHLPXWXS--PAGISPSKIPSSMVRMDTSKVPAPEVKDKYISFSST 654
S H+P + S PA +P +PS+ +TS P+P+ Y S SST
Sbjct: 2915 SIHVPSFHSTQPAN-APFTLPSTSRSFNTSSPPSPKPLSSYFSRSST 2960
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 483 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 304
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 303 RLASNIVL 280
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6)
Length = 281
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 510 MQLSRFPRYFNDSQRQATKDAGTISGLNVLRI 605
+ + RFPRY N+ ++ +G +SG++ I
Sbjct: 194 LSIGRFPRYLNEITCESASGSGPVSGVSSCHI 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,483,008
Number of Sequences: 59808
Number of extensions: 552299
Number of successful extensions: 1718
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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