Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N21
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   4.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   8.5  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 412 G*RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           G R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 218 GSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 418 RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKKDR 266


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 549 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 641
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 418 RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 418 RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 418 RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 418 RQNLFPRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRVTSMTLKDK 558
           R   F R S  H  YE+  +    S++N  E S    R      KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,793
Number of Sequences: 438
Number of extensions: 4711
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)