Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 254 NRHKAMRKHKCENEIKIKNY 195
           N ++ +RK+ C+NE + KN+
Sbjct: 326 NHNEQLRKYLCKNEDETKNH 345


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 254 NRHKAMRKHKCENEIKIKNY 195
           N ++ +RK+ C+NE + KN+
Sbjct: 218 NHNEQLRKYLCKNEDETKNH 237


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 404 WYRSSRTSLLTYWIFLLQMLESARR 478
           W+  S    +  W FLLQ LE   R
Sbjct: 54  WFAGSSNVGINKWRFLLQCLEDLDR 78


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 533 RFGFPNPVNYNDNELFCG-GY 592
           ++G+ N  NYN N L  G GY
Sbjct: 61  QYGYHNHQNYNSNVLSNGYGY 81


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 533 RFGFPNPVNYNDNELFCG-GY 592
           ++G+ N  NYN N L  G GY
Sbjct: 61  QYGYHNHQNYNSNVLSNGYGY 81


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 533 RFGFPNPVNYNDNELFCG-GY 592
           ++G+ N  NYN N L  G GY
Sbjct: 61  QYGYHNHQNYNSNVLSNGYGY 81


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 533 RFGFPNPVNYNDNELFCG-GY 592
           ++G+ N  NYN N L  G GY
Sbjct: 61  QYGYHNHQNYNSNVLSNGYGY 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,165
Number of Sequences: 336
Number of extensions: 3852
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)