Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   7.9  

>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 229 TNAKMK*KSKIINCS---KFKRRAKLQKYVSGAARRTA*ALSVLRITM 95
           TN K   K+K+ N S   KF+   +L+K++     R+  A   LR+T+
Sbjct: 457 TNLKENKKTKVANASAQSKFEAVNQLKKFLGSLGNRSLNAREPLRVTL 504


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 410 RSSRTSLLTYWIFLLQMLESARRGAEGHGRLMDP 511
           R SR SL  Y   L+QM +S +   EG GR  DP
Sbjct: 406 RRSRRSL--YSPSLMQMQQSLKSDYEGLGRTFDP 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,579
Number of Sequences: 5004
Number of extensions: 61722
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)