Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1725 - 39457075-39457419                                         29   4.7  
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113...    29   6.3  
02_04_0468 - 23172561-23174201                                         29   6.3  
01_06_0585 + 30415313-30415645                                         29   6.3  
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469...    28   8.3  
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947...    28   8.3  

>01_06_1725 - 39457075-39457419
          Length = 114

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 623 CGXCGDAAHLTEPRXHEAG 679
           CG C DA+   EPR HE G
Sbjct: 87  CGACRDASPRQEPRRHEGG 105


>11_01_0137 -
           1137979-1138257,1138419-1138970,1139052-1139409,
           1139577-1139869,1140623-1140675,1140785-1140941,
           1141666-1141683,1141846-1141929,1142005-1142064,
           1142182-1142222,1142316-1142451
          Length = 676

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 318 AITRQRNFGSLDFHWSRGKNIVE-PEWR 398
           A T +RNFG+    W  G N+VE  +WR
Sbjct: 543 AYTEERNFGTNSCVWLSGLNVVELKKWR 570


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 7   ILASAAVQPLPKSFLKYKNIQFRYISTGTPL*FGARLVPRPSAAPRH 147
           +L+  AV+ +P   +K K     Y+  G  + F  R  P PS  PRH
Sbjct: 473 VLSRFAVEVVPGQEVKPKLTTTLYMKNGLMVRFRRRSPPPPSPPPRH 519


>01_06_0585 + 30415313-30415645
          Length = 110

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 623 CGXCGDAAHLTEPRXHEAG 679
           CG C DA    EPR HE G
Sbjct: 83  CGACRDAGPRQEPRRHEGG 101


>12_02_0725 -
           22545423-22546251,22546352-22546547,22546791-22546973,
           22547076-22547275,22548030-22548133
          Length = 503

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 353 FSLVERKKYRRTRMEMRWYRSSRTSLLTYWIFLLQMLESARRG--AEGHGRLMD-PPA 517
           +SLV  +  +R       +R + T++L YW   L  LE  RR   A G+   +D PPA
Sbjct: 269 YSLVVARHAKRPEGWAYRFRRTNTTILYYWSATLCDLEPLRRSDQATGYAMHLDRPPA 326


>02_05_1086 +
           33994295-33994402,33994485-33994674,33994734-33994789,
           33995413-33995550,33995655-33995848,33996125-33996467
          Length = 342

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 578 FCGGYAVQWEQNEGKCGXCGDAAHLTEP 661
           F  G AV W Q   +C  C  A +LT P
Sbjct: 306 FHWGCAVPWVQTASRCPVCRAAVYLTSP 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,644
Number of Sequences: 37544
Number of extensions: 453747
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)