Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              67   1e-11
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         64   1e-10
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          63   2e-10
SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         60   2e-09
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)              30   2.8  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   8.5  

>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 488 GHGRLMDPPARNSMWRFGFPNPV--NYNDNELFCGGYAVQWEQNEGKCGXCGDAAHLTEP 661
           GHG L  PPARN         P   N+  NEL CGG+  QW +  GKCG CGD    T+ 
Sbjct: 19  GHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGGKCGVCGDPYGKTQ- 77

Query: 662 RXHEAGGMYGKGIVT 706
             H  GG + KG++T
Sbjct: 78  -RHTEGGEFAKGVIT 91


>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +2

Query: 443 IFLLQMLESARRGAEGHGRLMDPPARNSMWRFGFPN-PVNYNDNELFCGGYAVQWEQNEG 619
           +F L ++ S    A GHG + +P ARN   ++GF   P  Y  +E  CGG   QW++N G
Sbjct: 3   LFSLLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKNGG 62

Query: 620 KCGXCGDAAHLTEPRXHEAGGMYGKGIVT 706
           KCG CGD     +P      G +  G +T
Sbjct: 63  KCGVCGDRYDNPKPTL-VYPGKFATGTIT 90


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +2

Query: 443 IFLLQMLESARRGAEGHGRLMDPPARNSMWRFGFPNPV--NYNDNELFCGGYAVQWEQNE 616
           I  L +L +A     GHG +++P ARN+ +   FPN    NYN NE FCGG A Q   N 
Sbjct: 6   ILALSLLCNAVLLVHGHGYMIEPAARNACY-MKFPNQCVRNYNANEQFCGGRATQ-IANG 63

Query: 617 GKCGXCGDAAHLTEPRXHEAGGMYGKGIVT 706
            KCG CGD+     P  H   G Y  G +T
Sbjct: 64  NKCGVCGDSYSNPSP-PHVYPGKYATGFIT 92


>SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = +2

Query: 488 GHGRLMDPPARNSMWRFGFPN--PVNYNDNELFCGGYAVQWEQNEGKCGXCGDAAHLTEP 661
           GHG + +P AR   +R  FP    V++  +EL CGG++ Q ++N GKCG CGDA HLT+ 
Sbjct: 19  GHGFIQEPAARQVCYR-EFPKCTSVHWTPDELNCGGFSTQNDKNGGKCGVCGDAYHLTD- 76

Query: 662 RXHEAGGMYGKGIVT 706
           +     G +  G++T
Sbjct: 77  KAFVYPGKFALGVIT 91


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +2

Query: 443 IFLLQMLESARRGAEGHGRLMDPPARNSMWRFGFPNPV-NYNDNELFCGGYAVQWEQNEG 619
           +F L ++ S    A GHG + +P ARN+  ++GF   +  +  +E  CGG + QW+ N G
Sbjct: 3   LFSLLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDNGG 62

Query: 620 KCGXCGDAAHLTEPRXHEAGGMYGKGIVT 706
           KCG CGD     +P      G +  G +T
Sbjct: 63  KCGVCGDRYDNPKPTL-VYPGKFATGTIT 90


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 387  PEWRCDGTGLVGP--HC*PIGYFCCKCWKARVAEPK 488
            P W C+G G   P   C P GY+C +  +A V+EPK
Sbjct: 2688 PGWYCEGFGNSKPTDKCAP-GYYCPENSQASVSEPK 2722


>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
          Length = 499

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 GFPN-PVNYNDNELFCGGYAVQWEQNEGKCGXCGDAAHLTE 658
           G P+ PV    +++FC G    W +N G C  C     +++
Sbjct: 337 GVPSTPVVTQCDQIFCSGCITAWLRNAGACSSCRSVLEVSD 377


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 393  WRCDGTGLVGP--HC*PIGYFC 452
            W CD TGLV P   C P G+FC
Sbjct: 2403 WYCDSTGLVQPKDECDP-GFFC 2423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,601,086
Number of Sequences: 59808
Number of extensions: 501777
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)