BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_N19 (857 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.4 U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.4 AF099913-13|AAC68755.1| 143|Caenorhabditis elegans Hypothetical... 28 7.4 AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 7.4 >U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. Length = 441 Score = 28.3 bits (60), Expect = 7.4 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%) Frame = +2 Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532 SS S++T W FLL++L+ + RG +G RL+D A W Sbjct: 58 SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105 >U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. Length = 441 Score = 28.3 bits (60), Expect = 7.4 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%) Frame = +2 Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532 SS S++T W FLL++L+ + RG +G RL+D A W Sbjct: 58 SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105 >AF099913-13|AAC68755.1| 143|Caenorhabditis elegans Hypothetical protein C29F9.13 protein. Length = 143 Score = 28.3 bits (60), Expect = 7.4 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -3 Query: 177 NGARNYRNMSVARRGGRPRH*ACSESQWCTRTYVSKLNVFVFQKTFWERLYRS 19 +G R+ R+ + AR+G PR A S+S +C R Y F F+ T E L S Sbjct: 3 SGTRS-RSSTKARKG-TPRPPALSQSVYCGRRYTGPHTTFFFEITNDEYLLLS 53 >AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell lineage protein 1 protein. Length = 441 Score = 28.3 bits (60), Expect = 7.4 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%) Frame = +2 Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532 SS S++T W FLL++L+ + RG +G RL+D A W Sbjct: 58 SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,515,305 Number of Sequences: 27780 Number of extensions: 373001 Number of successful extensions: 707 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 707 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2139963672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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