Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        28   7.4  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        28   7.4  
AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical...    28   7.4  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    28   7.4  

>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


>AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical
           protein C29F9.13 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -3

Query: 177 NGARNYRNMSVARRGGRPRH*ACSESQWCTRTYVSKLNVFVFQKTFWERLYRS 19
           +G R+ R+ + AR+G  PR  A S+S +C R Y      F F+ T  E L  S
Sbjct: 3   SGTRS-RSSTKARKG-TPRPPALSQSVYCGRRYTGPHTTFFFEITNDEYLLLS 53


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 413 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARNSMW 532
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,305
Number of Sequences: 27780
Number of extensions: 373001
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)