Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   QILASAAVQPLPKSFLKYKNIQFRYISTGTPL 99
           QILA   ++ +P   +K+KN   +Y +T  P+
Sbjct: 248 QILAKKEIKGVPTYLIKWKNWDLKY-NTWEPI 278



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 503 MDPPARNSMW--RFGFPNPVNYNDNELF 580
           + PP ++     +F FP   NYNDN  +
Sbjct: 117 VQPPTKHQKLDQKFIFPQENNYNDNYFY 144


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 521 NSMWRFGFPNPVNYNDN----ELFCGGYAVQWEQ 610
           N+ +++ + N  NYN+N    +L+   Y +  EQ
Sbjct: 93  NNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 623 CGXCGDAAH 649
           CG CGD AH
Sbjct: 78  CGACGDIAH 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 404 WYRSSRTSLLTYWIFLLQMLE 466
           W+  S    +  W FLLQ LE
Sbjct: 58  WFAGSTNIGINKWRFLLQCLE 78


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 581 CGGYAVQWEQNEGKCGXCGDAAH 649
           C GY    +     C  CGD+ H
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,759
Number of Sequences: 438
Number of extensions: 5591
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)