Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N19
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    29   5.2  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    29   5.2  
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    29   5.2  
At3g16200.1 68416.m02045 expressed protein                             28   9.1  
At3g03270.1 68416.m00323 universal stress protein (USP) family p...    28   9.1  

>At4g38600.2 68417.m05463 HECT-domain-containing protein /
            ubiquitin-transferase family protein similar to
            SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
            {Homo sapiens}; contains Pfam profile PF00632:
            HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 300  CPVFFSAITRQRNFGSLDFHWSRGKNIVEPEWRCDGTGLVGPHC*PIGYFCCKCWKARVA 479
            CP  F   TR++ F S  F  SR  N ++ +   DG+G        IG    +  K RV+
Sbjct: 1328 CPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRL--QRQKVRVS 1385

Query: 480  EPKVTD 497
              ++ D
Sbjct: 1386 RNRILD 1391


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
            ubiquitin-transferase family protein similar to
            SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
            {Homo sapiens}; contains Pfam profile PF00632:
            HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 300  CPVFFSAITRQRNFGSLDFHWSRGKNIVEPEWRCDGTGLVGPHC*PIGYFCCKCWKARVA 479
            CP  F   TR++ F S  F  SR  N ++ +   DG+G        IG    +  K RV+
Sbjct: 1419 CPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRL--QRQKVRVS 1476

Query: 480  EPKVTD 497
              ++ D
Sbjct: 1477 RNRILD 1482


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 584 GGYAVQWEQNEGKCGXCGDAAHLTEPRXHEAGGMYGKG 697
           GG   +    EG+C  CGD  H         GG  G G
Sbjct: 119 GGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGG 156


>At3g16200.1 68416.m02045 expressed protein
          Length = 452

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 246 VPVIFHLN-FVVVSSTGAFCPV-FFSAITRQRNFGSLDFHWSRGKNIVEPEW 395
           + V FH + FV +S       + FF     + +FG+L   W R K+  E EW
Sbjct: 85  ISVAFHSHSFVCISRFDPAARIGFFGLDGLESDFGALGVPWCRSKHGKEVEW 136


>At3g03270.1 68416.m00323 universal stress protein (USP) family
           protein / early nodulin ENOD18 family protein contains
           Pfam profile PF00582: universal stress protein family;
           similar to early nodulin ENOD18 (GI:11602747) [Vicia
           faba]
          Length = 201

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 128 GLGTKRAPNHNGVPVLMY 75
           GLG+ + PNHNG  ++M+
Sbjct: 129 GLGSLKRPNHNGFMIIMF 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,379
Number of Sequences: 28952
Number of extensions: 345663
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)