Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N18
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    28   1.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.4  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   7.8  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = -3

Query: 308 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 135
           RLIW + +     +S S G    +   +T++ E    C  +IS   N I + + + TE+ 
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424

Query: 134 LVLFKSVIQLIHQIFISRIF 75
             +FK+ +  +    + R F
Sbjct: 425 FTIFKAKLSKVIASVLDRAF 444


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 392 NSEFPWCIFSFCGFHCKP*KSLQVSWLP 309
           N E P C+     +HCKP   L V W+P
Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 240 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 338
           ++TI+   + PT+ ++ V PN P  P + Q LL
Sbjct: 7   SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +1

Query: 283 KMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIA 462
           K K Y+  +  +   +  Y  Q +  + K+ Q N     ++DE RK LE+ L  +   + 
Sbjct: 44  KSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDE-RKLLENELSQIKEYLR 102

Query: 463 EVLLNAIRILTNTERIRSI 519
           E   +   +L +   ++S+
Sbjct: 103 EKSSSYDTVLHDCSSLKSV 121


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 506 GFVAYSLGNHYQETYRRLLTMSLNILTILIQQMTSIRWEGL 628
           G +A S GNH Q       T+ +    ++ Q    I+W  +
Sbjct: 163 GVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,695
Number of Sequences: 5004
Number of extensions: 61457
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)