Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N18
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    39   0.004
03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904...    31   0.88 
11_06_0196 + 21144094-21144483                                         30   2.0  
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510...    30   2.7  
04_01_0596 - 7852529-7855185,7855545-7855581                           29   3.6  
02_05_1175 - 34706870-34707616                                         28   8.2  

>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/102 (21%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
 Frame = +1

Query: 328 KDFYGLQWKPQ-KLKMHQGNSELGP--IDDERRKFLEDALKSLTVNIAEVLLNAIRILTN 498
           KD  G  W    K  +  G+    P  + +E +K+  +A+++ T+++ + +    +++  
Sbjct: 3   KDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVMKT 62

Query: 499 TERIRSIQFGEPLPGDVQAAFDNVLEYIDDIDTANDFYKMGG 624
            + +  +Q     P +++   D + E+++ ID AND + +GG
Sbjct: 63  PDDV--LQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGG 102


>03_02_0515 -
           9046450-9046996,9047125-9047227,9047319-9047540,
           9048350-9048400,9048966-9049168,9049276-9049361
          Length = 403

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 23/110 (20%), Positives = 49/110 (44%)
 Frame = +1

Query: 403 DDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPGDVQAAFDNVLEYI 582
           ++ERR   E   + + V++    +  I +L +T  +  ++     P D++     +  ++
Sbjct: 49  EEERRWLAEAVERHMMVDVVS-RMREIALLMSTP-LSVLEAHGITPDDIEGLLAELQVHV 106

Query: 583 DDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSWXELCQNNPFCQE 732
           + ID AND + +GG         + N ++   +       + QNNP  Q+
Sbjct: 107 ESIDMANDLHSVGGLVPVIKYLRNSNARIRARA-ADVVTTVVQNNPTSQQ 155


>11_06_0196 + 21144094-21144483
          Length = 129

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 689 RTGEGHGTFSFSLP*HIGNIANPPIL*KSFAVSISSIYSRTLSKAACTSPGSGSPN 522
           R G G G+ S ++P     +A PP + +  AV++    +  ++K     P S SP+
Sbjct: 55  RVGRGRGSASTAIPTTKSAVAKPPAVAEPLAVAVIKPPAAAVAKPPWPQPRSPSPS 110


>09_04_0708 +
           19648511-19648808,19649189-19649280,19650850-19651000,
           19651779-19651906,19652099-19652257,19652325-19652507,
           19652978-19653178,19653269-19653289
          Length = 410

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 544 DVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSW--XELCQNN 717
           D Q A   +L  ++ ID AND  K+GG         + NE++   S   +W   +  QNN
Sbjct: 161 DRQRALQELLILVEPIDNANDLDKLGGLVAVIQDLNNANEEIRTTS---AWVLGKASQNN 217

Query: 718 PFCQEK 735
              Q +
Sbjct: 218 ALVQNQ 223


>04_01_0596 - 7852529-7855185,7855545-7855581
          Length = 897

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 727 GRTDCSDRAQXRTVLARGTGPSHFRFHSILET*QTLPSYR 608
           GR D +     R +L  GT P HF    +L+    LPSYR
Sbjct: 141 GRLDSAINVSCR-MLRAGTRPDHFTLPHVLKACGELPSYR 179


>02_05_1175 - 34706870-34707616
          Length = 248

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +1

Query: 637 PIC--YGSENEKVPCPSPVR-SWXEL 705
           P+C  YG  N   PCP P+R +W  L
Sbjct: 131 PVCPFYGHPNPPAPCPCPLRQAWGSL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,629
Number of Sequences: 37544
Number of extensions: 370235
Number of successful extensions: 968
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)