Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N18
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02150.1 68418.m00136 expressed protein                             51   8e-07
At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family pr...    48   1e-05
At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family pr...    42   5e-04
At3g51980.1 68416.m05702 expressed protein                             31   0.74 
At3g54260.1 68416.m05997 expressed protein various predicted pro...    29   3.9  
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    28   9.1  

>At5g02150.1 68418.m00136 expressed protein
          Length = 324

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 32/130 (24%), Positives = 61/130 (46%)
 Frame = +1

Query: 343 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 522
           L+W    L    G      + +E RK+  +A++S TV++ + L    ++L   +++  ++
Sbjct: 12  LKWS---LSHSDGTRPTCQLSEEDRKWFAEAMQSQTVDVVKRLKEITQVLQTPQQV--LE 66

Query: 523 FGEPLPGDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSWXE 702
             E  P D++   D + E+++ ID AND + +GG         + N  +   S       
Sbjct: 67  AHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKS-ADVVST 125

Query: 703 LCQNNPFCQE 732
           + +NNP  QE
Sbjct: 126 IVENNPRSQE 135


>At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
 Frame = +1

Query: 343 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 522
           L+W    L    G      + +E RK+  +A++S TV++ + +     ++   E++  ++
Sbjct: 12  LKWS---LSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVL-VE 67

Query: 523 FGEPLPGDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSWXE 702
            G   P D+Q   D + E+++ ID AND + +GG  + P+    +N      +       
Sbjct: 68  HGVT-PEDIQDLLDELQEHVESIDMANDLHSIGG--LVPLLSFLKNSHANIRAKAADVVS 124

Query: 703 -LCQNNPFCQE 732
            + QNNP  QE
Sbjct: 125 TIVQNNPRSQE 135


>At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 31/130 (23%), Positives = 58/130 (44%)
 Frame = +1

Query: 343 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 522
           L+W    L    G S    I +E R++  +A+++ T++    +    +I+   E++   Q
Sbjct: 12  LKWS---LSHSDGASSSSRISEEDRQWFVEAMQAHTIDSISRMKVISQIMKMPEQVLEAQ 68

Query: 523 FGEPLPGDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSWXE 702
                P D++     + E+++ ID AND + +GG         + N K+   S       
Sbjct: 69  --GVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKS-ADVLTT 125

Query: 703 LCQNNPFCQE 732
           + QNNP  Q+
Sbjct: 126 VVQNNPRSQQ 135


>At3g51980.1 68416.m05702 expressed protein
          Length = 382

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 544 DVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVPCPSPVRSW--XELCQNN 717
           D   A   +L  ++ ID AND  K GG     +  G  N        + +W   +  QNN
Sbjct: 135 DRHRALQELLILVEPIDNANDLSKSGGLR---VVAGELNHDDTEVRKLAAWVLGKASQNN 191

Query: 718 PFCQEK 735
           PF QE+
Sbjct: 192 PFVQEQ 197


>At3g54260.1 68416.m05997 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 379

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 687 YWRGARDLLIFASIAYWKHSK 625
           YWRG  D+L+F S  +W HS+
Sbjct: 199 YWRGV-DVLVFDSAHWWTHSQ 218


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 575 SRTLSKAACTSPGSGSPNCMLRILSV 498
           S T S   C SPGS +PN + R++ +
Sbjct: 104 SSTSSSEICNSPGSKTPNLVARLMGL 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,715
Number of Sequences: 28952
Number of extensions: 311516
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)