Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N17
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 8e-05
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 33 0.068
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 31 0.21
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.63
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 4.4
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 7.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 7.8
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 7.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 7.8
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 26 7.8
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 576 VPTYEVLDKR-DTLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFVQSENS-TEPYTD 749
V Y+ +D R TL++ L + + +++++DL+ N+ H WF +S +S T P D
Sbjct: 73 VSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRD 132
Query: 750 YFIW 761
++ W
Sbjct: 133 WYFW 136
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 32.7 bits (71), Expect = 0.068
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 660 RVIVDLIPNYVFTNHTWFVQSENSTEPYTDYF 755
R I+D++ NY+F+ + V E E YTD+F
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFF 487
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.1 bits (67), Expect = 0.21
Identities = 28/89 (31%), Positives = 37/89 (41%)
Frame = -2
Query: 484 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 305
PT PSS S T+TA S T T + T SS Y+S SS
Sbjct: 464 PTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSPYYSNSS 515
Query: 304 LVIPVNCRLLASSSIFASPFLWSPTTYFA 218
+++P S S F+S SPT+ F+
Sbjct: 516 IIVPTTVSTSGSVSSFSSS--PSPTSSFS 542
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -2
Query: 481 TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 308
TR SSY + S + + ++ +P+S S+++ ++ +S + K SS+ S+S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 612 VCHVCRALRKSALGRTRPE 556
VC +C +L K+A+GR RP+
Sbjct: 102 VCGLCVSLLKNAVGRPRPD 120
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -2
Query: 454 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 296
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 585 YEVLDKRDTLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFV----QSENSTEPYTDY 752
Y+ +D+ D I+ K I IRVI + + WF+ Q NS + Y+ +
Sbjct: 217 YDSIDELDFSVLNSIVSLDAKDIYIRVICSFVNTGFIDSTNWFLNSFNQRRNSLQLYSSW 276
Query: 753 FI 758
FI
Sbjct: 277 FI 278
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 366 VLFWVAWLCMLAGAIAVI 419
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -2
Query: 442 GPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSS 263
GP +G+R + + + + T + + +QK S +Y + SL +P LL ++
Sbjct: 523 GPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLLIGTT 582
Query: 262 IF 257
F
Sbjct: 583 RF 584
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 594 LDKRDTLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFVQSENSTE 737
L+ ++ + K + N +KI ++ DL+P+ T WF E E
Sbjct: 125 LESKNLVKSIKSVKNPTRKI--YMLYDLVPSTELTGGPWFTDQELDVE 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,912
Number of Sequences: 5004
Number of extensions: 67029
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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