Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N14
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 127 1e-29
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 5e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 48 1e-05
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 35 0.074
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 3.7
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 4.9
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 6.4
11_01_0433 - 3323372-3324616,3324708-3324905 28 8.5
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 28 8.5
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 127 bits (306), Expect = 1e-29
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Frame = +2
Query: 26 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 202
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 203 LNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGG 382
+ Y ++Y + +VN E IVGW++TG V+ S++IH++YSRE + P+H+T+DT G
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRG 137
Query: 383 RMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 520
++AY+ L + + F + + L E VG + + T
Sbjct: 138 DASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKST 183
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 5e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +2
Query: 29 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 196
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 197 AELNYAMDVYELNRRVNS 250
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 101 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 274
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 35.1 bits (77), Expect = 0.074
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 98 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAM--DVYELNRRVNSSESIVGW 271
RV G ++G VE+ N F + D V L+ A EL ++V ++GW
Sbjct: 68 RVFGCVIGVQRGRTVEIFNSFELV----LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 123
Query: 272 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 373
++TG++V + IH+ PV++ L+ ++
Sbjct: 124 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 304 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 200
G V + +AS+PP FR +++ Q+V I + +KF
Sbjct: 442 GSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKF 476
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 304 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 200
G+V + AS+PP FR +++ Q++ I + +KF
Sbjct: 439 GIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKF 473
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 441 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 343
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 244 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 149
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 304 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 200
G V + +A+RPP FR +++ Q++ I + +KF
Sbjct: 469 GSVNWKMANRPPIKLPFRKVENCNQVLKIGKELKF 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,586,665
Number of Sequences: 37544
Number of extensions: 421046
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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