Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N14
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...   105   3e-23
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    69   4e-12
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   3.3  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score =  105 bits (253), Expect = 3e-23
 Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 20/189 (10%)
 Frame = +2

Query: 11  MALNISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPH 172
           MA N++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P 
Sbjct: 1   MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60

Query: 173 KEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE--- 343
            E  D +E +  +   +    ++ + +E  VGW+ T +++T+   + H+YY R   E   
Sbjct: 61  NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120

Query: 344 -----PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPE 490
                P+ V T+DT+ +G    RM +RAY+    G+P   G    +F P+ V L  +  E
Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGE 180

Query: 491 IVGLQVCQK 517
           +V +Q+ +K
Sbjct: 181 LVAMQLIEK 189


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
 Frame = +2

Query: 29  VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 199
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 200 ---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 370
              +++Y   +Y +  +V + E IVGW+ TG ++  +   I+E   R C  PV V +D  
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160

Query: 371 LAGGRMGLRAYV 406
                +   AY+
Sbjct: 161 PKNIGLPTEAYI 172


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 153 TASACHTKNMPIKSKRNLITRWMFTS 230
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +2

Query: 29  VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 190
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F   +  +E A+ 
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73

Query: 191 VEAELNYAMDVYELNRRVNSSESIVGWWATGNE 289
           V     + +   +    V     ++G +  G +
Sbjct: 74  VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,649
Number of Sequences: 27780
Number of extensions: 349752
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)