Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N13
(861 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 126 2e-31
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 73 2e-15
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 73 3e-15
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 73 3e-15
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 58 1e-10
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 5.4
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.5
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 126 bits (305), Expect = 2e-31
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2
Query: 479 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE+ NCIID RQRN
Sbjct: 79 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRN 136
Score = 45.2 bits (102), Expect = 7e-07
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXEXXR 731
CQYCRY KCL GMKREAVQ E R
Sbjct: 138 CQYCRYQKCLNMGMKREAVQEERQR 162
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 73.3 bits (172), Expect = 2e-15
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +2
Query: 491 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQR 649
+ LC +CGDRASG HY +CEGCKGFF+R++ K+ Y C+ NC ID R
Sbjct: 185 EELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMR 237
Score = 29.1 bits (62), Expect = 0.047
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
CQ CR KCL GM+ E V E
Sbjct: 240 CQECRLKKCLSVGMRPECVVPE 261
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 72.9 bits (171), Expect = 3e-15
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC--REDXNCIIDXRQRN 652
C +CGD +SGKHY +++C+GC GFFKR++R++ Y C +++ +CIID RN
Sbjct: 38 CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90
Score = 28.7 bits (61), Expect = 0.062
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
C+ CR KC GM ++AVQ E
Sbjct: 92 CRACRLKKCQNVGMNKDAVQHE 113
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 72.9 bits (171), Expect = 3e-15
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC--REDXNCIIDXRQRN 652
C +CGD +SGKHY +++C+GC GFFKR++R++ Y C +++ +CIID RN
Sbjct: 38 CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90
Score = 28.7 bits (61), Expect = 0.062
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
C+ CR KC GM ++AVQ E
Sbjct: 92 CRACRLKKCQNVGMNKDAVQHE 113
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 57.6 bits (133), Expect = 1e-10
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA-CREDXNCIIDXRQRNXLPVLPI 673
LC +CG+ A+G H+G ++CEGCK FF RT + + C+ + C+I+ + R +
Sbjct: 4 LCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKACRL 63
Query: 674 PKVSPLRHEKGG 709
K + K G
Sbjct: 64 RKCLLVGMSKSG 75
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 566 GFFKRTVRKDLTYACREDXNC 628
G FK T + D+T+ +D +C
Sbjct: 122 GIFKSTCKMDITWFPFDDQHC 142
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 566 GFFKRTVRKDLTYACREDXNC 628
G FK T + D+T+ +D +C
Sbjct: 122 GIFKSTCKMDITWFPFDDQHC 142
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 566 GFFKRTVRKDLTYACREDXNC 628
G FK T + D+T+ +D +C
Sbjct: 122 GIFKSTCKMDITWFPFDDQHC 142
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 566 GFFKRTVRKDLTYACREDXNC 628
G FK T + D+T+ +D +C
Sbjct: 122 GIFKSTCKMDITWFPFDDQHC 142
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 566 GFFKRTVRKDLTYACREDXNC 628
G FK T + D+T+ +D +C
Sbjct: 122 GIFKSTCKIDITWFPFDDQHC 142
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,489
Number of Sequences: 336
Number of extensions: 2963
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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