Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N13
(861 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 1e-18
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 87 2e-17
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 85 9e-17
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 9e-17
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 82 5e-16
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 80 2e-15
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 80 2e-15
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 80 3e-15
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 8e-15
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 77 1e-14
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 73 2e-13
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 69 5e-12
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 68 1e-11
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 67 2e-11
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 53 3e-07
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 31 1.2
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 90.6 bits (215), Expect = 1e-18
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRNXLP 661
LC +CGDR+SGKHYGV++C+GC+GFFKR++R++LTY C+E C++D +RN P
Sbjct: 22 LCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCP 76
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 86.6 bits (205), Expect = 2e-17
Identities = 31/51 (60%), Positives = 43/51 (84%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
C++CGD++SGKHYGVY+CEGCK FFKR++R+ L+Y+CR NC +D + RN
Sbjct: 79 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRN 129
Score = 37.1 bits (82), Expect = 0.018
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQ 716
CQYCR KCL GM++EAVQ
Sbjct: 131 CQYCRLKKCLKVGMRKEAVQ 150
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 86.6 bits (205), Expect = 2e-17
Identities = 32/51 (62%), Positives = 42/51 (82%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
C++CGD++SGKHYGV++CEGCK FFKR+VR++LTY CR +C ID RN
Sbjct: 243 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRDCPIDQHHRN 293
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQ 716
CQYCR KCL GM+REAVQ
Sbjct: 295 CQYCRLKKCLKVGMRREAVQ 314
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 84.6 bits (200), Expect = 9e-17
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
C +CGD +GKHYGV +CEGCKGFFKRTVRK+L Y CR +C ID RN
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSNDCFIDKVHRN 92
Score = 31.5 bits (68), Expect = 0.91
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKRE 707
CQ CR+ KCL GMK+E
Sbjct: 94 CQKCRFVKCLTAGMKKE 110
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 84.6 bits (200), Expect = 9e-17
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +2
Query: 479 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQR 649
++ S+ +C+ICGDR+SG HYGV SCEGCK FFKRTV+K L YAC E +C ID R
Sbjct: 7 VTSSQRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNR 63
Score = 37.1 bits (82), Expect = 0.018
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 651 IXCQYCRYXKCLPCGMKREAVQXE 722
I CQYCR+ KCL GM +EAV+ +
Sbjct: 64 IRCQYCRFQKCLALGMLKEAVRED 87
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 82.2 bits (194), Expect = 5e-16
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
LC +CGD +SG+HYGVY+C+GC GFF R+VR+D+ Y C+ + C +D ++RN
Sbjct: 34 LCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGGCTVDKKRRN 85
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
CQ CR+ KCL M R AVQ E
Sbjct: 87 CQACRFKKCLEVKMNRFAVQQE 108
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 80.2 bits (189), Expect = 2e-15
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
C IC DRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR NC+I+ +RN
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRN 60
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKRE 707
C++CR KC GMK+E
Sbjct: 62 CRFCRLRKCFRAGMKKE 78
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 80.2 bits (189), Expect = 2e-15
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRNXLP 661
C++CGD+++GKHYGV +CEGCK FFKRTVR + Y CR C ID R+ P
Sbjct: 57 CAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQNTCAIDRNSRSRCP 110
Score = 33.9 bits (74), Expect = 0.17
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQ 716
C CR+ KCL GMK+EAVQ
Sbjct: 109 CPSCRFQKCLSTGMKKEAVQ 128
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 79.8 bits (188), Expect = 3e-15
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = +2
Query: 485 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
G+ C +C D+A+G HYGV++CEGCKGFFKRTV+K L Y CR + +C I+ RN
Sbjct: 818 GAPPACVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRN 873
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXEXXRXXRGK 746
CQYCR+ KC+ GM ++ + R + K
Sbjct: 875 CQYCRFEKCVKSGMLKQGMSFLDHRQKKQK 904
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 78.2 bits (184), Expect = 8e-15
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
+C +C DRASG+HYGV +CEGCKGFFKR+VR+++ Y C CI+D RN
Sbjct: 736 ICLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVYHCMFRETCIVDKVLRN 787
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
CQ CR KCL GM++ AVQ E
Sbjct: 789 CQKCRMDKCLAVGMQKSAVQYE 810
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 77.4 bits (182), Expect = 1e-14
Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRE---DXNCIIDXRQRN 652
C +CGDR+SGKHYG+Y+C+GC GFFKR++R++ +Y CR NC +D RN
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRN 61
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/53 (58%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRE-DXNCIIDXRQRN 652
+C+IC D+A+G+HYGV SCEGCKGFFKR+V+ Y CR +C ID R RN
Sbjct: 197 ICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHRN 249
Score = 35.1 bits (77), Expect = 0.074
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
CQYCR+ KC+ GM +EAV+ +
Sbjct: 251 CQYCRFQKCIQAGMIKEAVRED 272
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 68.9 bits (161), Expect = 5e-12
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQR 649
C++C +SG+HYGV++CEGCK FF RTVR LTY C +C +D + R
Sbjct: 22 CAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTYICEGSGSCRVDKQNR 71
Score = 32.3 bits (70), Expect = 0.52
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQ 716
CQ CR+ KC GM+REA++
Sbjct: 74 CQACRFKKCATVGMRREAIR 93
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 67.7 bits (158), Expect = 1e-11
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +2
Query: 497 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
+C +CGD+++GKHYGV++C+GC GFFKRT R+ + C+ C + RN
Sbjct: 23 VCVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRN 74
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Frame = +2
Query: 488 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLT--YAC-REDXN-CIIDXRQR 649
S+ C++CGD +SG HYG Y+CEGCK FFKRTV++ L Y+C R + N C +D R
Sbjct: 3 SEEKCAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSR 60
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 52.8 bits (121), Expect = 3e-07
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +2
Query: 548 SCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRN 652
+C+GC+GFFKR+VR++L Y C+E +C ID +RN
Sbjct: 2 TCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRN 36
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQXE 722
CQ CR KC M R+AVQ E
Sbjct: 38 CQACRLRKCFEMNMNRDAVQHE 59
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 657 CQYCRYXKCLPCGMKREAVQ 716
CQ+CR KCL GMKREAVQ
Sbjct: 76 CQFCRMRKCLAVGMKREAVQ 95
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +2
Query: 500 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDXNCIIDXRQRNXLPVLPIPK 679
C CG AS H G SCE C G + + D + C I Q L + I
Sbjct: 3628 CFKCGTGASAPHLGSASCE-CSGLNRVFMPSDGSCVCEATFQSIEGREQDCVLKLYGICG 3686
Query: 680 VSPLRHEKGGCA 715
R++ G C+
Sbjct: 3687 EGTWRNQAGECS 3698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483,845
Number of Sequences: 59808
Number of extensions: 359626
Number of successful extensions: 659
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -