Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N11
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.5  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   5.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 577  PQPYPXREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALP 705
            P P P  +A P+P   ++ P      T  +P+ S GA +A  P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 553  PYPVKVLVPQPYPXREARPLPRQGSSAPTL 642
            P P   L P P P  +A P+P   S AP++
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/89 (22%), Positives = 34/89 (38%)
 Frame = +3

Query: 303  PTSPRPSPSXKGVPVTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GS 482
            P  P PS     VPV   +      PS EA ++S   S  P+     + + +   +   +
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAA 1276

Query: 483  RPRSRAIPSRKEGALSRTRTS*QALPRQG 569
              R+    S+ +     T TS +   + G
Sbjct: 1277 PARTSVSRSKSKAERHETSTSSRKSSKSG 1305


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 400  YPVKVAVPQPYEVVKHVPYHVKEYVKV 480
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 130 QLCFLSSSSHWQPLLLPAGKLSRA 59
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 550 RPYPVKVLVPQPYPXREARPLP 615
           +PYP++ L+PQ  P   A+ +P
Sbjct: 281 KPYPIQKLLPQNCPEGHAKMIP 302


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 370 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 477
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,543
Number of Sequences: 5004
Number of extensions: 52143
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)