Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N11
(856 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61255.1 68414.m06903 expressed protein 36 0.034
At2g05510.1 68415.m00583 glycine-rich protein 35 0.079
At1g27710.1 68414.m03387 glycine-rich protein 33 0.18
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP... 33 0.32
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 33 0.32
At5g61660.1 68418.m07736 glycine-rich protein 32 0.42
At5g46730.1 68418.m05757 glycine-rich protein 32 0.56
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.56
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.74
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.74
At2g05530.1 68415.m00585 glycine-rich protein 31 0.74
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.98
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 31 0.98
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 31 1.3
At1g11850.2 68414.m01364 expressed protein 31 1.3
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 30 1.7
At4g21620.1 68417.m03134 glycine-rich protein 30 1.7
At2g05440.2 68415.m00575 glycine-rich protein 30 1.7
At1g11850.1 68414.m01363 expressed protein 30 1.7
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 30 1.7
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 2.3
At3g15400.1 68416.m01954 anther development protein, putative si... 29 3.0
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 3.0
At4g30460.1 68417.m04325 glycine-rich protein 29 3.9
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 29 3.9
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 3.9
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 3.9
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 5.2
At4g10330.1 68417.m01698 glycine-rich protein 29 5.2
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 5.2
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 5.2
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 5.2
At2g05440.1 68415.m00574 glycine-rich protein 29 5.2
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 6.9
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 6.9
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain... 28 6.9
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 6.9
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 6.9
At1g66820.1 68414.m07595 glycine-rich protein 28 6.9
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 28 6.9
At1g04800.1 68414.m00476 glycine-rich protein 28 6.9
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 28 9.1
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 9.1
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 9.1
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 28 9.1
At1g38380.1 68414.m04694 hypothetical protein 28 9.1
>At1g61255.1 68414.m06903 expressed protein
Length = 143
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 170 NLGYGYG-IDGLDV----GYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLXQ 334
N GYG G GL G+I G G GG+Y+ + GGYS G G V T+ +
Sbjct: 48 NKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRG--------VRLTVMCEE 99
Query: 335 RRPCYLTPSTDP 370
+ CY+ T P
Sbjct: 100 KGHCYMKKLTCP 111
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 170 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
N G G+G+DG G+ GH G GG Y GG+ G GGH
Sbjct: 67 NGGGGHGLDGYGGGHGGHYGGGGGHYG-GGGGHGGGGHYGGGGH 109
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
G+G G G G+G G GG Y G Y G G GGH
Sbjct: 62 GHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGH 103
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 158 RGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
+G L G GYG G G G+G G GG + GG+ G G GG
Sbjct: 99 KGELTAG-GYGGGGPGYGGGGYGPGGGGGGVVIGGGFGGGAGYGSGG 144
>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
Length = 186
Score = 32.7 bits (71), Expect = 0.32
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +2
Query: 131 NPLEKKLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 310
NP++++ D+ G G GYG G G G G GG Y GG GYG G+
Sbjct: 18 NPIQQQYDEYGNPMGGGGYGTGGGGGATGGQGYGTGG-QGYGSGG--QGYGTGGQGYGTG 74
Query: 311 TKT 319
T T
Sbjct: 75 TGT 77
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 GYGYGIDGL-----DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHT 304
G+G+G G+ G G G G+G NY G SG G +GGH+
Sbjct: 84 GWGWGWGGVPNNTHSSGSGGSGWGMGPNNNYSSGSGGSGSGWGYGGHS 131
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 176 GYGYGI-DGLDVGYIGHGQGLGGA----YNYVDGGYSSGYGLNFGG 298
GYGYG G GY G+G G GGA Y Y G SG G GG
Sbjct: 74 GYGYGSGSGSGTGY-GYGSGGGGARGGGYGYGSGNGRSGGGGGGGG 118
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 176 GYGYGIDGL-DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
GYG G +G G GHG G GGA + GGY+SG G GG
Sbjct: 72 GYG-GAEGYASGGGSGHGGGGGGAAS--SGGYASGAGEGGGG 110
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
GYG G G G G G+G GG+Y GG S G GGH
Sbjct: 242 GYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGGGH 283
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +2
Query: 161 GLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G+ + GYG G G G G G+G GG Y + GY+SG G GG
Sbjct: 47 GVSSGGYG-GESGGGYGG-GSGEGAGGGYGGAE-GYASGGGSGHGG 89
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G YG G G G G G GG Y GG + GYG GG
Sbjct: 220 GGAYGGGGAHGGGYGSGGGEGGGYG---GGAAGGYGGGGGG 257
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGYGLNFG 295
GYG G G G G G G GG Y GG ++SGYG G
Sbjct: 111 GYG-GAAGGHAGGGGGGSGGGGGSAYGAGGEHASGYGNGAG 150
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 176 GYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G G G GY G G+G GG Y GG++ G G GG
Sbjct: 88 GGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 176 GYGYGIDGLD----VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
GYG G+ +GY G G GG YN GGYS G G +GG
Sbjct: 279 GYGGGVGPYRGEPALGYSGRYGGGGGGYNR--GGYSMGGGGGYGG 321
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G GYG G+ G+G G+GGA GGY G G + GG
Sbjct: 346 GGGYGSSGIG----GYGGGMGGAGG---GGYRGGGGYDMGG 379
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 170 NLGYGYGIDGLDVGYIGHGQGLGGAYNY---VDGGYSSGYGLNFGG 298
N G GYG DG G+ G G GG Y GG S GYG +GG
Sbjct: 227 NFGGGYG-DGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYG-GYGG 270
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
GYG G+ G G G+ G G V GG + GYG GG+
Sbjct: 356 GYGGGMGGAGGG--GYRGGGGYDMGGVGGGGAGGYGAGGGGN 395
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 298
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 298
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 182 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
G+G +G GY G G G G + GGY+ G G N GGH
Sbjct: 44 GHGGNG---GYNGGG-GYNGGGGHNGGGYNGGGGYNGGGH 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYG 283
GYG G G GY G G+ GG Y DGG G G
Sbjct: 131 GYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
GY G G G G+G GG GGY G G ++GG
Sbjct: 124 GYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGG 164
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 31.1 bits (67), Expect = 0.98
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Frame = +1
Query: 349 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVHXXXXXXXXXXXXX 528
P V+ P P P + P P K+ P P V K P +++ VPV+
Sbjct: 232 PPKVELPPPIPKKPCPPKPPKIEHPPPVPVYKPPP-KIEKPPPVPVY-KPPPKIEHPPPV 289
Query: 529 XXXXXXDRPYPVKVLVPQPYPXRE---ARPLPRQGSSAPTLP 645
+P P K + P P P + +P P + P +P
Sbjct: 290 PVHKLPKKPCPPKKVDPPPVPVHKPPTKKPCPPKKVDPPPVP 331
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +1
Query: 319 HH--PRSKASLLPYAVDRPVP---YPVEKHVPYPVKVAVPQPYE--VVKHVPYHVKEYVK 477
HH P PY+ +P P YP P P+K P PYE VK+ P +K Y
Sbjct: 38 HHWPPFKWGPKFPYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPP-PIKTYPH 96
Query: 478 VPV 486
PV
Sbjct: 97 PPV 99
>At1g11850.2 68414.m01364 expressed protein
Length = 108
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 161 GLLNLGYGYGID---GLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
GL LG G GI GL +G G G G GG GG+ G G GG
Sbjct: 58 GLGGLGIGAGIGAGAGLGLGGGGGGLGGGGGGLLGGGGFGGGAGGGLGG 106
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 161 GLLNLGYGYGIDG-LDVGYIGHGQGLGGAYNYVDGGYSSGYGLN 289
GL+ +G+ G + VG IG G G GG +V GGY++G N
Sbjct: 22 GLVQTDASFGVGGGVGVG-IGGGGGGGGGGVWVGGGYNNGGNRN 64
>At4g21620.1 68417.m03134 glycine-rich protein
Length = 131
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 140 EKKLDKRGLLNLGYGYGIDGLD-VGYIGHG---QGLGGAYNYVDGGYSSGYGLNFGGHTD 307
E K G LG+G G+ G + G+G G+GG Y GG S G+G GG
Sbjct: 21 ESARQKSGNDGLGFG-GVPGSGFIPGFGNGFPGTGVGGGYGGGFGGPSGGFGK--GG--V 75
Query: 308 VTKTITLXQRRPC 346
V T+T ++ PC
Sbjct: 76 VRPTVTCKEKGPC 88
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G YG G G G G G GG Y GGY G G + GG
Sbjct: 100 GGHYGGGGGHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGGG 140
>At1g11850.1 68414.m01363 expressed protein
Length = 93
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 167 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
L LG G G+ GL IG G G G GG+ G G GG
Sbjct: 51 LGLGGGAGLGGLG---IGAGIGAGAGLGLGGGGFGGGAGGGLGG 91
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 516 LFDWVWRGNVDGNLNVLLHVIWHVFDDLVGLGHGYLDGIRHV 391
L WV+ G V G + +L+V+W D+ G G ++D + ++
Sbjct: 93 LVSWVYFGVVLGVVLFILNVVW--IDNSTGFGKSFIDAVSNI 132
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 299 HTDVTKTITLXQRRPCYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLR 478
H+ T + + P +PS P HT S PS P P+ S H S
Sbjct: 202 HSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHS--PAHAPSHSPAH 259
Query: 479 FPSTFPRHTQS 511
PS P H+ S
Sbjct: 260 APSHSPAHSPS 270
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2
Query: 173 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 295
+G GYG G VGY G G G G + +G SSG G FG
Sbjct: 207 VGRGYGSGGSGVGY-GVGIGSSGGSGFGEGIGSSG-GNGFG 245
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +2
Query: 146 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
K D+RG + G Y G G G+ QG GG Y G Y G G GG
Sbjct: 38 KPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGG 88
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTD 307
G G+G G G G G G G Y +GG GYG +GG D
Sbjct: 122 GGGHGGGGGGGGGRGGGGGSGNGEGYGEGG---GYGGGYGGGDD 162
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 176 GYGYGIDGL--DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 310
G G G+ G ++GY G G GG + GG SG G GG + +
Sbjct: 54 GVGGGVSGPGGNLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGSGI 100
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +2
Query: 176 GYGYGIDGLDVG--YIGHGQG-LGGAYNYVDGGYSS---GYGLNFGG 298
GYG G G + G Y +G G LGG N GYSS YG FGG
Sbjct: 247 GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGG 293
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 170 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDG--GYSSGYGLNFGG 298
N G G G G + Y G+ G GG Y G GYG NFGG
Sbjct: 158 NAGGGGGYGG-NSSYGGNAGGYGGNPPYSGNAVGGGGGYGSNFGG 201
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 209 GYIGHG-QGLGGAYNYVDGGY---SSGYGLNFGGH 301
G+ G G G GG Y DGGY + GYG GG+
Sbjct: 115 GFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY 149
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 194 DGLDVGYIGHGQGLGGAYNYVDGGYSS-GY 280
DG D G G G G GGA GYSS GY
Sbjct: 219 DGKDGGEAGKGSGPGGATGPPKAGYSSHGY 248
>At4g10330.1 68417.m01698 glycine-rich protein
Length = 130
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 167 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 295
L +G G+G +G +G G G+ G + G G G+ FG
Sbjct: 35 LGVGCGFGFGAGLIGGVGFGPGVPGLQFGLGFGAGCGIGVGFG 77
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 173 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 277
LG+G G G+ VG+ G+G G G AY++ Y+ G
Sbjct: 64 LGFGAGC-GIGVGF-GYGVGRGAAYDHSRSYYNVG 96
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 164 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 289
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 164 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 289
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 170 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGY-GLNFGGH 301
+ G G G G G G G G GG Y GG Y GY G + GG+
Sbjct: 579 SFGSGRGGYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGY 624
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 170 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG---YGLNFGGH 301
N G G+G+DG G GH G GG Y G Y G YG GGH
Sbjct: 65 NGGGGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGGGGGGYGGG-GGH 109
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 182 GYGIDGLDVGYIGHGQGLGGAYNYVDGGY--SSGYGLNFGGH 301
G G G G G G G G Y GGY S GYG GG+
Sbjct: 122 GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY 163
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNY-VDGGY---SSGYGLNFGG 298
G GYG G GY G G GGA Y GGY + GYG N GG
Sbjct: 127 GGGYGGGG--GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 298
GYG G G G G+G G GG GGY +GG
Sbjct: 142 GYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNY--VDGGYSSGYGLNFGGH 301
G GYG G GY G G GG+ Y GGY G +GG+
Sbjct: 134 GGGYGGSG---GYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGN 174
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 218 GHGQGLGGAYNYVDGGYSSGYGLNFGG 298
G G+G GG GGY G G ++GG
Sbjct: 74 GGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF00169: Pleckstring homology
(PH) domain, PF01852: Lipid-binding START domain
Length = 733
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = -2
Query: 600 FSXWVGLGHEHLDGVRPV-------NWYVYGI--RHLLFDWVWRGNVDGNLNVLLHVIWH 448
F + G EHLDG + +W +G+ R LL WR DG +L H ++H
Sbjct: 240 FCFYKGNVVEHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRRYWRREDDGTYVILCHSVYH 299
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 349 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 489
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 349 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 489
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 349 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 489
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 349 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 489
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g66820.1 68414.m07595 glycine-rich protein
Length = 109
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 173 LGYGYGIDGLDVGYIGHGQGLGGAYNYVD 259
LG+G G G+ G+ G+G G+GG Y++ D
Sbjct: 76 LGFGIGC-GIGFGF-GYGFGVGGGYSFDD 102
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIG 220
GYGYG++ + +GY+G
Sbjct: 148 GYGYGLEEMSIGYLG 162
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 277
G+G GI G G+ G G G GGA VDGG+ G
Sbjct: 81 GFGGGIGG---GFGGGGFG-GGAGKGVDGGFGKG 110
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +2
Query: 176 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 301
G GYG G GY G G G GG GG S Y GH
Sbjct: 155 GGGYGGGG---GYGGGGGGYGGGGRGGGGGGGSCYSCGESGH 193
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 405 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRT 542
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRS 57
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 405 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRT 542
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRS 57
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 146 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 277
K+ RG+++ G +G + + HG G+ Y Y DGG+ G
Sbjct: 139 KMSGRGVMSWANGDLFNGFWLNGLRHGSGV---YKYADGGFYFG 179
>At1g38380.1 68414.m04694 hypothetical protein
Length = 378
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 331 SKASLLPYAVDRPVPYPVEKHV 396
S +S LPY + P P P+E HV
Sbjct: 336 SSSSALPYQLPSPPPIPMEPHV 357
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,778
Number of Sequences: 28952
Number of extensions: 305213
Number of successful extensions: 1345
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -