Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N09
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 29 0.86
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 29 0.86
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 28 1.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 2.0
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 27 4.6
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 8.0
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 8.0
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 29.1 bits (62), Expect = 0.86
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 272 TKASYPVKVSHFSFSPVIDVVYQP-STNRYL 183
T+ PVK H+ SPV DV Y P TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 508 ILKILTTFKISSVSLVKRAYTMEPGTNCPQT*RPRRNSAQKW 633
+++ LT+++I + ++V ++P T CPQ RR QK+
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNTTCPQC-MARRKMQQKY 281
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +1
Query: 244 LTLTG*EAFVGATM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKL--- 414
L+L G +AF +++ ++ S+ + + T P+ T P+ ++T +++L
Sbjct: 173 LSLYGNQAFNPSSVLPSNSSSTPKENKKNVNKETYQPN---TFRRSPLKNDTGSVELSNL 229
Query: 415 -LPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTFKISSVSLVKRAYTMEPGTNC 591
+PS ++ +L ++P +PP+ +++ LK L + + + L+ +A+T +
Sbjct: 230 YMPSPPSSALPVSLVSAP---SPPRATNVAVPCLKHLESSEQGNNLLINKAFTSPRLPSP 286
Query: 592 PQT*RP 609
PQ+ RP
Sbjct: 287 PQSTRP 292
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 400 AALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTFKISSVSL 552
A + L S+ S+ + TSP L KD+S +DILK+ K ++ SL
Sbjct: 215 ARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKSATPSL 265
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 243 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 76
SL ++P N GV LY + G Y V+ D T L + L R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723
Query: 75 V 73
+
Sbjct: 724 M 724
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +1
Query: 211 TTSITGEKEK*LTLTG*EAFVGATM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVT 390
TTS T + + +++ ++SL S+ ATA S + S T++ T
Sbjct: 203 TTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTT 262
Query: 391 SETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPT 504
+ T+A SA+ + S L +S STP ++ T
Sbjct: 263 AATSASATSSSAQ-YNTSSLLPSSTPSSTPLSSANSTT 299
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 311 TDERKLFVHIVAPTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHT 165
+ R+ F++IVA ASYP FS D +PS +R + V T
Sbjct: 59 SSSRRTFMYIVATLNASYP--DHDFSSLQPTDFYKEPSLSRVVDSVNST 105
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 464 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 327
GD+ S PL D P D + + G++ + + D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 8.0
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Frame = +3
Query: 63 QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGE--- 233
+V P+ + +AS +H + PY + + L+ H +WG+
Sbjct: 72 EVAVPNFKSPASASNDVFHAHIPNFLSVEQTPYDPEQYAAEAEADAALLEHDAHWGQRIK 131
Query: 234 GKVTNLDRVR-GFRRSYNVNEQFALVSKG 317
KV N R R G SY N Q S G
Sbjct: 132 HKVDNTVRWRLGPSGSYQSNAQIVQWSDG 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,169
Number of Sequences: 5004
Number of extensions: 65667
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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