Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N09
(866 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 33 0.30
SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 30 2.1
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 30 2.8
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5) 29 6.5
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 6.5
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 6.5
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 28 8.6
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 34.3 bits (75), Expect = 0.13
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +1
Query: 388 TSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSS---LPTDILKILTTFKISSVSLVK 558
T ETA + A R S A Q S G S P + S+ + + T ++++ K
Sbjct: 128 TRETATSSINTEATSRQPSTATQVS-GPSLPMQHSTEHHSTSGVASPSTKQPSTALTTTK 186
Query: 559 RAYTMEPGTNCPQT*RPRRNSAQKWSLPTXGQSTITCTT 675
+ T + TN P T +P N +LP+ Q T T T
Sbjct: 187 QPTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQPTTTQQT 225
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -1
Query: 581 PGSIV*ALFTKLTLEILNVVRIFRISVGNDES---FGGVDNPGDVCSAPLTDRPRADGNS 411
P +V A T LTL I+++V +F +++G+DE +GG D+ D D D N
Sbjct: 1302 PNGVVVA--TMLTLVIVSLVVMFSMTMGDDEDVCCYGGGDDDDD------DDYDNGDDND 1353
Query: 410 FNAAVSDVTGSVAVVHRHDGNP 345
++ + ++ +H G+P
Sbjct: 1354 YDFVTNKSRNTLEAIHLSKGSP 1375
>SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 340 PTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTP--PKDSSL-PTDI 510
P +C T+P T+ T +P+ ++ L T+ + P P+ ++L PTD
Sbjct: 154 PEPATTCAPVPTTIPTTATTTEPTTVPTTIPTTIPTTLPTTEPTTAPTTPEPTTLEPTDP 213
Query: 511 LKILTTFKISSVSLV 555
+TT K+ VS V
Sbjct: 214 PTTVTTLKMRKVSSV 228
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +1
Query: 292 NSLRSSVRATARESKYPT--GFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQ 456
+SL + +++ S +PT PS T+++LP +TS ++ L S+ S+S L
Sbjct: 452 SSLSDFLTSSSSLSVFPTPSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLT 509
Query: 457 TSPGLSTPPKDSSLPTDIL---KILTTFKISSVSL 552
+S LS SSLP+D L + + F SS SL
Sbjct: 510 SSSSLSVFYTSSSLPSDFLTSSSLPSDFLTSSSSL 544
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +1
Query: 331 SKYPTGFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLP 501
S + T PS T+++LP +TS ++ L S+ S+S L +S LS SSLP
Sbjct: 712 SDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLTSSSSLSVFYTSSSLP 769
Query: 502 TDIL---KILTTFKISSVSL 552
+D L + + F SS SL
Sbjct: 770 SDFLTSSSLPSDFLTSSSSL 789
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +1
Query: 280 TM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQT 459
T ++S ++S+ + + PS +++ + TS ++A L PS + S LQT
Sbjct: 725 TQESSSFQTSIYPSQSSIFRTSVLPSSYFSSTVILETSSSSASSLAPSPTATTTS-TLQT 783
Query: 460 SPGLSTPPKDSSLPTDILKILTT 528
+ STP +L + ++ T
Sbjct: 784 TEPSSTPSTSPALTVTMTTVIAT 806
>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1209
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 530 NVVRIFRISVGNDESFGGVDNP--GDVCSAP 444
N +R F + +G D + GGV NP GDV + P
Sbjct: 140 NRLRSFELRIGEDGTRGGVSNPKCGDVYAIP 170
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 463 PGLSTPPKDSSLPTDILKILTTFKISSVSLV 555
P TP + S LPT + ILTT S++L+
Sbjct: 784 PATPTPTETSMLPTQVKSILTTVLTGSMTLM 814
>SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)
Length = 250
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -1
Query: 347 PVGYLLSLAVALTDERKLFVHIVAPTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVH 168
P ++ S+ VA+ K+ + + P + +K + + PVID + TN + VV
Sbjct: 98 PTNWVFSMVVAVKRNGKIRL-CIDPKPLNKALKRNRYPL-PVIDDLLAKLTNAKVFTVVD 155
Query: 167 TEVGYWGVWIQQ 132
+ G+W V + +
Sbjct: 156 AKNGFWHVQLDE 167
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 367 TTATLPVTSETAALKLLPSARGRSVSGALQTSPGLST 477
T+ P +++ +A+ S RG+ V+GA+QTS LST
Sbjct: 874 TSVAAPTSAQYSAVTS-SSPRGQGVAGAIQTSTPLST 909
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 370 TATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTFKISSVS 549
T+TL T ++ + A R+V AL + + T P +PT ++ LTT +S+
Sbjct: 803 TSTLIATLQSPTPQTTTVATPRTVISALPSPTVVPTVPPAKPVPTPVVSSLTTPLVSATV 862
Query: 550 L 552
L
Sbjct: 863 L 863
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 352 PSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 510
P W T +T+E A K + G S G S PPK +LP +I
Sbjct: 9 PRKFWPQKTSRLTTEILATKNIVPCHGNSGPQKYAPYHGNSGPPKHRALPPEI 61
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 76 RQRKNGKPPLSQTTTQMRTCC 138
++RK P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,635,686
Number of Sequences: 59808
Number of extensions: 534416
Number of successful extensions: 1671
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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