Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N09
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 304 SSVRATARESKYPTGFPSCLWTTATLP-VTSET-AALKLLPSARGRSVSGALQTSPGLST 477
           SS  +T   +   T  PS    T T+P  TSE  A + +         +G L TS  + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398

Query: 478 PPKDSSLPTDILKILTTFKIS 540
           PP   + P D L +  T   S
Sbjct: 399 PPYPENCPEDSLFLPGTIAAS 419


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
 Frame = +1

Query: 304 SSV-RATARESKYPT------GFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTS 462
           SSV +AT   S  PT         S   TTA LP T+ T       S      + AL T+
Sbjct: 224 SSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTTTSTTFAAPQASTEPSEATEALATA 283

Query: 463 PGLSTPPKDSSLPTDILKILTTFKISSVSLVK 558
                P K S    +I  I  T K+SS S  K
Sbjct: 284 TPADLPTKPSG--REITTITGTRKLSSTSTTK 313


>U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK418.9b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   TGGYTQQHAQPQYDNQFQSFPGKN 73
           TGG+ QQ  QPQ+ +Q Q +  +N
Sbjct: 392 TGGFIQQQQQPQFQHQQQQWAPQN 415


>U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical
           protein ZK418.9a protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   TGGYTQQHAQPQYDNQFQSFPGKN 73
           TGG+ QQ  QPQ+ +Q Q +  +N
Sbjct: 439 TGGFIQQQQQPQFQHQQQQWAPQN 462


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 473  DNPGDVCSAPLTDRPRADGNSF----NAAVSDVTGSVAVVHRH-DGNPV 342
            D   D C+ PL  +P  +GN +     A +++  G+ A + R+ +GN V
Sbjct: 1501 DRSNDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGV 1549


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 370 TATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTFKISS 543
           T T P T+E +  +   +    +VS    T+P LS  P D +  TDI   +   ++SS
Sbjct: 208 TTTEPSTTEPSTTEEFTTEETTTVSTNPPTTPELSDDPTDGNDATDIDDKIVKKEVSS 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,444
Number of Sequences: 27780
Number of extensions: 382099
Number of successful extensions: 1323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)