Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N09
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.90 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 275 PTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEV 159
           PT  +   +   FSF     +VY+PS  R  HE+  T+V
Sbjct: 495 PTPTTESEERRFFSFHQWGILVYEPSACRPRHEIRSTDV 533


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 69  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGKVTN 248
           K     K    S+ + +  ED++ P      +  +  ++IPI R L        EG  T+
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPN-DEGIETD 204

Query: 249 LDRVRG 266
            DR +G
Sbjct: 205 SDRRKG 210


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 213 HVDYWGEG----KVTNLDRVRGFRRSYNVNEQFALVSKGHSK 326
           H+  W  G    K+ +LD  +     YN N ++ +V   HS+
Sbjct: 176 HIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 260 KRLSSELQCERTVCARQ*GPQQGKAN 337
           + L + L  E++VC  + G  Q KAN
Sbjct: 20  EELKTRLHTEQSVCKTETGIDQQKAN 45


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 346 GFPSCLWTTATLPVTSETAAL 408
           G    LWT A+    SET AL
Sbjct: 294 GASDILWTQASAKAISETGAL 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,064
Number of Sequences: 438
Number of extensions: 4606
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)