Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N09
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    32   0.57 
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    30   2.3  
At4g06479.1 68417.m00885 hypothetical protein                          28   7.0  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    28   7.0  
At3g04470.1 68416.m00474 expressed protein                             28   9.3  
At2g32800.1 68415.m04015 protein kinase family protein contains ...    28   9.3  

>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 395 SDVTGSVAVVHRHDGNPVGY---LLSLAVALTDERKL 294
           SDVTG V  + R DG PVGY   L+S+  +    +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 395 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 312
           SDV+G +  + R DG PVGY  +L   L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMY 173
           ++ TP++   E  S  D H  E+ LYP   IPY   Y
Sbjct: 289 KLATPAKRPCEICSHTD-HPTEECLYPPQTIPYTDDY 324


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 120 TNEDLLYPYSPIPYFGMYHLVKIPIGRG 203
           T EDL+ P+S    FG    VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363


>At3g04470.1 68416.m00474 expressed protein
          Length = 423

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +1

Query: 325 RESKYPTGFPSCLWTTATLPVTSE--TAALKLLPS--ARGRSVSGALQTSPGLSTPPKDS 492
           RES+Y  G    LW T   P+T++     L +L +     R +   L T   L T P   
Sbjct: 238 RESEYKKGLRPVLWLTPDFPLTTDELLPLLDILANKVKAVRRLRELLTTKLPLGTFPVKL 297

Query: 493 SLP-TDILKILTTF-KISSVSLVKRAYTMEPGT 585
           ++P    ++++ TF K   +   +  ++  P +
Sbjct: 298 AIPIIPTVRVVVTFTKFEELQAAEEEFSTPPSS 330


>At2g32800.1 68415.m04015 protein kinase family protein contains
           dual protein kinase domains, Pfam:PF00069
          Length = 851

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 12  TRSNTRSLNMTTSFSHSQVKTPSEEKWEAASEPDYHTNEDLLYPY 146
           TR+   +   TTSF+ S   TPS     A  +  Y T E    PY
Sbjct: 454 TRTTMTTTTSTTSFNASSESTPSSNYVTALEDSIYQTAETGENPY 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,715
Number of Sequences: 28952
Number of extensions: 361877
Number of successful extensions: 1129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)