Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N08
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    63   6e-11
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   4.5  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 41/111 (36%), Positives = 59/111 (53%)
 Frame = +2

Query: 392 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 571
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117

Query: 572 RHAAEAHRQTRXPSAXGSSLA*L**IFVKSXRRLXXVLLGEDGLKAGLAXP 724
           R AAE HRQ R  +             V +       L+ EDGLK+G+  P
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFP 168



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 601 KKXIRNXIKPGMTMIDICEELXKTAXRLIG*RWAQSRSGXXPQXCXRNXCAXHXTPNPG 777
           ++  ++ IKPGM+M+D+   +  T   L+     +S  G  P     N CA H TPN G
Sbjct: 128 RQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGF-PTGVSLNHCAAHYTPNAG 185


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = +3

Query: 495 ELQKIVLQVRRKELLIDYIKIFIRKSDMLLKPTGRQEXHPQXDQAWHDYDRYL 653
           E++ +V + + ++LL+    ++IR SD++ K   ++      D+ W   D+ +
Sbjct: 270 EVEIVVYEKKNEKLLLPVGLLWIRLSDLVEKQRRKKVEQEVSDKGWVSADKMI 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,280
Number of Sequences: 5004
Number of extensions: 34611
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)