Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N08
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    65   7e-11
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.46 
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    29   3.2  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    29   3.2  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    29   3.2  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    29   3.2  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +2

Query: 413 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 586
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK+ALD  +++++Q+ R +AE
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138

Query: 587 AHRQTRXPSAXGSSLA*L**IFVKSXRRLXXVLLGEDGLKAGLAXP 724
           AHRQ R                 +        L+ E GL+AGLA P
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFP 184



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/59 (45%), Positives = 36/59 (61%)
 Frame = +1

Query: 601 KKXIRNXIKPGMTMIDICEELXKTAXRLIG*RWAQSRSGXXPQXCXRNXCAXHXTPNPG 777
           +K +++ IKPGMTMI+ICE L  T+ RLI  +  ++     P  C  N CA H TPN G
Sbjct: 144 RKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAF-PTGCSLNHCAAHYTPNAG 201


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 407 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 583
           ++P+ EL  +G   +   M H P  G + R A K +F+S  K  +  L KDIY    H  
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186

Query: 584 EAHRQTRXPSAXG 622
           E HR  +     G
Sbjct: 187 EWHRTPQTNETDG 199


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 30  VAFLRIVYISFPINYYLNNSAL 95
           +AFLR++ I FP++YY N S +
Sbjct: 102 IAFLRVIAICFPVSYYNNRSKI 123


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 16  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 13  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 22  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,742
Number of Sequences: 27780
Number of extensions: 207649
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)