BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_N08 (860 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 65 7e-11 Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 32 0.46 U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.80 U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 3.2 AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 3.2 AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 3.2 AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 3.2 >AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical protein Y116A8A.9 protein. Length = 444 Score = 64.9 bits (151), Expect = 7e-11 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Frame = +2 Query: 413 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 586 P+ E FPDG FP G +D P +G D R A +R ++EEK+ALD +++++Q+ R +AE Sbjct: 81 PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138 Query: 587 AHRQTRXPSAXGSSLA*L**IFVKSXRRLXXVLLGEDGLKAGLAXP 724 AHRQ R + L+ E GL+AGLA P Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFP 184 Score = 56.0 bits (129), Expect = 3e-08 Identities = 27/59 (45%), Positives = 36/59 (61%) Frame = +1 Query: 601 KKXIRNXIKPGMTMIDICEELXKTAXRLIG*RWAQSRSGXXPQXCXRNXCAXHXTPNPG 777 +K +++ IKPGMTMI+ICE L T+ RLI + ++ P C N CA H TPN G Sbjct: 144 RKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAF-PTGCSLNHCAAHYTPNAG 201 >Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical protein ZK1128.5 protein. Length = 446 Score = 32.3 bits (70), Expect = 0.46 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +2 Query: 407 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 583 ++P+ EL +G + M H P G + R A K +F+S K + L KDIY H Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186 Query: 584 EAHRQTRXPSAXG 622 E HR + G Sbjct: 187 EWHRTPQTNETDG 199 >U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical protein F30B5.8 protein. Length = 294 Score = 31.5 bits (68), Expect = 0.80 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 30 VAFLRIVYISFPINYYLNNSAL 95 +AFLR++ I FP++YY N S + Sbjct: 102 IAFLRVIAICFPVSYYNNRSKI 123 >U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone receptor familyprotein 46, isoform a protein. Length = 528 Score = 29.5 bits (63), Expect = 3.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = -1 Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426 P+ Y ++ Q+ PH + F +HQ P P S HQ I Sbjct: 16 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62 >AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 525 Score = 29.5 bits (63), Expect = 3.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = -1 Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426 P+ Y ++ Q+ PH + F +HQ P P S HQ I Sbjct: 13 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59 >AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 534 Score = 29.5 bits (63), Expect = 3.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = -1 Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426 P+ Y ++ Q+ PH + F +HQ P P S HQ I Sbjct: 22 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68 >AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 527 Score = 29.5 bits (63), Expect = 3.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = -1 Query: 566 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 426 P+ Y ++ Q+ PH + F +HQ P P S HQ I Sbjct: 15 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,943,742 Number of Sequences: 27780 Number of extensions: 207649 Number of successful extensions: 588 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 546 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 584 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2150453690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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