Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N07
         (857 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   3.9  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   9.0  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 154 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRG 333
           +++K   + D     T L  R  WR+  AL   D  + +  +++G     +    S + G
Sbjct: 159 NRNKRTSIVDITFCSTTLSERLNWRVSDALTLSDHNVVRYAIIQGHRLTSSSAHGSRVGG 218

Query: 334 RG 339
           RG
Sbjct: 219 RG 220


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 322 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 441
           G +G  G   P G++    ++  DG P Y  +    G PG
Sbjct: 130 GEKGTKGEPGPVGLQGPKGDRGRDGLPGYPGIPGTNGVPG 169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 943,953
Number of Sequences: 2352
Number of extensions: 20591
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91372671
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)