Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N07
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 LVKTGRLCVTTPTNWWKDV*LLAE 514
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 LVKTGRLCVTTPTNWWKDV*LLAE 514
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 LVKTGRLCVTTPTNWWKDV*LLAE 514
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 7   ILCETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 174
           I C  F  R M   ++  IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 122 IYCGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 175


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 7   ILCETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 174
           I C  F  R M   ++  IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 363 IYCGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 416


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 RPKYLVVN-ADEGEPGTCKDREIMRHD 474
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 RPKYLVVN-ADEGEPGTCKDREIMRHD 474
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 RPKYLVVN-ADEGEPGTCKDREIMRHD 474
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 RPKYLVVN-ADEGEPGTCKDREIMRHD 474
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 RPKYLVVN-ADEGEPGTCKDREIMRHD 474
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 673 HRGVRIYQSHNQNH 632
           HR + IYQSH+  H
Sbjct: 64  HRDLPIYQSHHHLH 77


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 724 PQWXQ*ELSPHHRCMRRHRGVRIYQSHNQNHKSSYQ*DRXCKPQQ*QLA 578
           PQ  Q +     + ++ H    +YQ   Q+  +S Q      P+Q Q A
Sbjct: 181 PQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQA 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,040
Number of Sequences: 438
Number of extensions: 5537
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)