Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N06
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   279   2e-77
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   279   2e-77
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.22 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   4.6  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  279 bits (684), Expect = 2e-77
 Identities = 132/179 (73%), Positives = 148/179 (82%)
 Frame = +3

Query: 249 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 428
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 429 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 608
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 609 SGWCRRSHLSVLRVPPRLRTYRLAADVGKGDGQRESSGLGNCISKIFKSDGLIGLYRXF 785
           SG    +       P      RLAADVGK  G+RE +GLGNC++KIFK+DG+ GLYR F
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGF 179



 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 34/76 (44%), Positives = 37/76 (48%)
 Frame = +1

Query: 613 GGAAGATSLCFVYPLDFARTVSPPMSVRAMASVNPPVSETASARXXXXXXXXXXXXXXXX 792
           GGAAGATSLCFVYPLDFART       +A              +                
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGV 181

Query: 793 XXQGIIIYRASYFGFY 840
             QGIIIYRA+YFGFY
Sbjct: 182 SVQGIIIYRAAYFGFY 197



 Score = 28.7 bits (61), Expect = 0.071
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 276 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 455
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 456 LSFWRGNFANVIRYFPTQALNFAFKD 533
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 336 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 494
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  279 bits (684), Expect = 2e-77
 Identities = 132/179 (73%), Positives = 148/179 (82%)
 Frame = +3

Query: 249 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 428
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 429 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 608
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 609 SGWCRRSHLSVLRVPPRLRTYRLAADVGKGDGQRESSGLGNCISKIFKSDGLIGLYRXF 785
           SG    +       P      RLAADVGK  G+RE +GLGNC++KIFK+DG+ GLYR F
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGF 179



 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 34/76 (44%), Positives = 37/76 (48%)
 Frame = +1

Query: 613 GGAAGATSLCFVYPLDFARTVSPPMSVRAMASVNPPVSETASARXXXXXXXXXXXXXXXX 792
           GGAAGATSLCFVYPLDFART       +A              +                
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGV 181

Query: 793 XXQGIIIYRASYFGFY 840
             QGIIIYRA+YFGFY
Sbjct: 182 SVQGIIIYRAAYFGFY 197



 Score = 28.7 bits (61), Expect = 0.071
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 276 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 455
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 456 LSFWRGNFANVIRYFPTQALNFAFKD 533
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 336 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 494
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 695 LTDIGGETVRAKSRGYTKHREVAPAAPPGGQITSEVTPELR 573
           LT I  E + A        ++++PA P G + +   TPE++
Sbjct: 253 LTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIK 293


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 561 VDKKTQFWRYFAGNLASGWCRRSHLSVLRVPPRLRTYRL 677
           VDK   ++ +F   L +G   +SH        + R YRL
Sbjct: 455 VDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRL 493


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 561 VDKKTQFWRYFAGNLASGWCRRSHLSVLRVPPRLRTYRL 677
           VDK   ++ +F   L +G   +SH        + R YRL
Sbjct: 455 VDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRL 493


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 561 VDKKTQFWRYFAGNLASGWCRRSHLSVLRVPPRLRTYRL 677
           VDK   ++ +F   L +G   +SH        + R YRL
Sbjct: 81  VDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRL 119


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 8   WQHLASSFLLRRSTGQNC 61
           W H+  SFL  +ST   C
Sbjct: 68  WIHVDISFLPEKSTSSRC 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,367
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)