Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_N05
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 62 6e-10
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 61 1e-09
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 52 5e-07
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801... 52 6e-07
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553... 46 3e-05
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 30 2.9
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 29 6.7
03_02_0730 + 10784784-10785341 28 8.9
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 62.1 bits (144), Expect = 6e-10
Identities = 31/62 (50%), Positives = 37/62 (59%)
Frame = +3
Query: 303 DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQ 482
D + + V+GILNKLTPEKF +LK VI LIFEKA+ EP + MYAQ
Sbjct: 205 DRVLKTVKGILNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQ 264
Query: 483 LC 488
LC
Sbjct: 265 LC 266
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = +3
Query: 309 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQLC 488
+ + V+GILNKLTPEKF +LK VI LIFEKA+ EP + MYAQLC
Sbjct: 207 VLKTVKGILNKLTPEKFDLLKGQLIEAGITTADILKDVISLIFEKAVLEPTFCPMYAQLC 266
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 52.4 bits (120), Expect = 5e-07
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +3
Query: 315 RKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQLC 488
R+++ ILNKLTP+ F+K L GVI IF+KAL EP + MYA C
Sbjct: 1570 RQLKAILNKLTPQNFEKLFEKVKEVNIDNVATLTGVISQIFDKALMEPTFCEMYANFC 1627
>06_03_0247 +
18679278-18679319,18679522-18679620,18679897-18680100,
18680334-18680431,18680554-18680641,18680728-18681078,
18682093-18682623
Length = 470
Score = 52.0 bits (119), Expect = 6e-07
Identities = 29/64 (45%), Positives = 35/64 (54%)
Frame = +3
Query: 297 KYDIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMY 476
KY ++ + V+GILN LTPEKF +LK VI LI EKA+ EP MY
Sbjct: 139 KYKVL-KTVKGILNLLTPEKFDILKDQLIEAGITRTDILKDVIDLILEKAVAEPTLCPMY 197
Query: 477 AQLC 488
AQ C
Sbjct: 198 AQFC 201
>06_03_0253 +
18753901-18754278,18754873-18754968,18755167-18755376,
18756028-18756093,18756379-18756576,18756616-18756810,
18756968-18757014,18757147-18757234,18757331-18757681,
18758593-18759123
Length = 719
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 303 DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQ 482
D + + ++ ILN +P+ F +LK VI LIFEK + EP + S YAQ
Sbjct: 389 DEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQ 448
Query: 483 LC 488
LC
Sbjct: 449 LC 450
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -2
Query: 392 FEPEEIIAQLLKFLRRELVENTTN--LAEYDVVLGISVGHVVMSE**GRDPASPRGDWRP 219
F+P + L + L+ E T + VLG SV + R +P+ W
Sbjct: 415 FKPTAVFVPLSEILKSGNFELVTREIFGPFQEVLGRSVNGTTYAGIRARTTGAPQNHWFG 474
Query: 218 PRGDARGPRL--PRAVR 174
P GD RG + P A++
Sbjct: 475 PAGDPRGAGIGTPEAIK 491
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 467 RVLRLVQGFLKNEKDDALEDPVGVQFEPEEIIAQLLKFLRRELVENTTNLAE 312
++L V+ + +KD+ V PEE IA+L K EL+E L E
Sbjct: 179 QLLPKVENEERKQKDEESNGVPKVNISPEEAIAKLAKDTDNELIEINKQLEE 230
>03_02_0730 + 10784784-10785341
Length = 185
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 242 SPRGDWRPPRGDARGPR 192
SP W+P GD RGPR
Sbjct: 41 SPPATWQPGEGDVRGPR 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,383
Number of Sequences: 37544
Number of extensions: 265204
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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