Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N05
         (909 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)                      69   5e-12
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 50   3e-06
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)                 40   0.002
SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)                    29   3.9  

>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
          Length = 770

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 276 DVP-DGDAKYDIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALX 452
           D P D   ++++    +  ILNKLTP+KF K              +LKGVILL+FEKAL 
Sbjct: 25  DFPRDERTEFEVYEVTLYSILNKLTPDKFDKLFYELLHVGVETKYILKGVILLVFEKALD 84

Query: 453 EPKYSSMYAQLC 488
           EP YSSMYAQLC
Sbjct: 85  EPAYSSMYAQLC 96



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 493 RLXEEAPNFEPPGSXVH-I*XLLLLNKCXXEF 585
           RL EEAPNF+ PG   +     LLL +C  EF
Sbjct: 98  RLSEEAPNFDDPGKTGNSTFRRLLLKQCEEEF 129


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/56 (41%), Positives = 35/56 (62%)
 Frame = +3

Query: 276 DVPDGDAKYDIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEK 443
           ++P+ ++K + + RK RGILNKLTP+KF+K               L+G+I +IFEK
Sbjct: 754 ELPEEESKTEEVMRKFRGILNKLTPQKFKKLTEQVMELEIDTSEKLEGIIDIIFEK 809


>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
          Length = 605

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 309 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEK 443
           + RK RGILNK+TP+ F+K               L+G+I ++FEK
Sbjct: 410 VMRKFRGILNKITPQNFKKLVEQVMNLEIDTAEKLEGIIDIVFEK 454


>SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)
          Length = 328

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 22/82 (26%), Positives = 31/82 (37%)
 Frame = -2

Query: 443 FLKNEKDDALEDPVGVQFEPEEIIAQLLKFLRRELVENTTNLAEYDVVLGISVGHVVMSE 264
           F + E  + L D +GV  +    I +  K  R + V N         ++  S       E
Sbjct: 105 FGRVEDFERLRDELGVVIQGRIAIMRYGKIFRGDKVANAARFGAKGAII-FSDPQQYAPE 163

Query: 263 **GRDPASPRGDWRPPRGDARG 198
               D   P G+W PP G  RG
Sbjct: 164 GTTPDKVYPNGEWLPPTGVQRG 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,895
Number of Sequences: 59808
Number of extensions: 258024
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)