Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N05
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    41   0.001

>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 309 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRV-LKGVILLIFEKALXEPKYSSMYAQL 485
           + +KVR ++NK+TP   +                 L  V+ ++F+KA+ EPK+ ++YA++
Sbjct: 516 VCKKVRSLMNKVTPTSQRPLTEEFISYNVSSNDAQLAQVVEIVFDKAVEEPKFCALYAEM 575

Query: 486 CXA 494
           C A
Sbjct: 576 CKA 578


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 309 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRV-LKGVILLIFEKALXEPKYSSMYAQL 485
           + +KVR ++NK+TP   +                 L  V+ ++F+KA+ EPK+ ++YA++
Sbjct: 517 VCKKVRSLMNKVTPTSQRPLTEEFISYNVSSNDAQLAQVVEIVFDKAVEEPKFCALYAEM 576

Query: 486 CXA 494
           C A
Sbjct: 577 CKA 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,232
Number of Sequences: 27780
Number of extensions: 192298
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)