Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N05
         (909 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57870.2 68418.m07239 eukaryotic translation initiation facto...    61   9e-10
At5g57870.1 68418.m07238 eukaryotic translation initiation facto...    61   9e-10
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d...    56   3e-08
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    52   5e-07
At1g62410.1 68414.m07041 MIF4G domain-containing protein similar...    33   0.20 
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa...    31   1.1  
At5g18070.1 68418.m02120 phosphoglucosamine mutase-related simil...    28   9.8  

>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 776

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +3

Query: 303 DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQ 482
           D + + V+GILNKLTPEK+                +LKGVI LIF+KA+ EP +  MYA+
Sbjct: 209 DRVLKTVKGILNKLTPEKYDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMYAK 268

Query: 483 LC 488
           LC
Sbjct: 269 LC 270


>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 780

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +3

Query: 303 DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQ 482
           D + + V+GILNKLTPEK+                +LKGVI LIF+KA+ EP +  MYA+
Sbjct: 213 DRVLKTVKGILNKLTPEKYDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMYAK 272

Query: 483 LC 488
           LC
Sbjct: 273 LC 274


>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 747

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/62 (43%), Positives = 36/62 (58%)
 Frame = +3

Query: 303 DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQ 482
           D + + V+GILNKLTPEK++               +LK VI LIFE A+ +P +  MYA 
Sbjct: 172 DRVVKSVKGILNKLTPEKYELLKGQLIDAGITSADILKEVIQLIFENAILQPTFCEMYAL 231

Query: 483 LC 488
           LC
Sbjct: 232 LC 233


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/58 (43%), Positives = 32/58 (55%)
 Frame = +3

Query: 315  RKVRGILNKLTPEKFQKXXXXXXXXXXXXXRVLKGVILLIFEKALXEPKYSSMYAQLC 488
            R+++ ILNKLTP+ F+K               L GVI  IF+KAL EP +  MYA  C
Sbjct: 914  RQLKSILNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFC 971


>At1g62410.1 68414.m07041 MIF4G domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02854: MIF4G domain
          Length = 223

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 411 LKGVILLIFEKALXEPKYSSMYAQLC 488
           L+ +  LIF+KA+ EP +  MYAQLC
Sbjct: 10  LQRLTTLIFDKAVLEPTFCPMYAQLC 35


>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
           family protein similar to inositol 1,4,5-trisphosphate
           5-phosphatase (GI:4688596) [Arabidopsis thaliana]
          Length = 861

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 220 GRQSPRGDAGSRPHHSDITTCPT 288
           G Q PRGD  + P H  +TT PT
Sbjct: 188 GGQVPRGDEDTAPFHESVTTSPT 210


>At5g18070.1 68418.m02120 phosphoglucosamine mutase-related similar
           to SP|Q9P4V2 Phosphoacetylglucosamine mutase (EC
           5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase)
           (N-acetylglucosamine-phosphate mutase) {Candida
           albicans}; contains Pfam profiles PF00408:
           Phosphoglucomutase/phosphomannomutase C-terminal domain,
           PF02878: Phosphoglucomutase/phosphomannomutase
           alpha/beta/alpha domain I
          Length = 556

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 446 GFLKNEKDDALEDPVGVQFEPEEIIAQLLKFLRRELVENTTNLAEYDVVLG 294
           GF+ +++ +   D +     PEE+++ + KF+ +E +    N    +V LG
Sbjct: 84  GFMLSQEWEPFADQIANASSPEELVSLIRKFMEKEEIAIGENNKGAEVWLG 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,009
Number of Sequences: 28952
Number of extensions: 180250
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)