Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N04
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.33 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 451 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKF 594
           R   G S RT  +  +K GA      + + RPR       L RLK +F
Sbjct: 202 RPSSGRSPRTRRV--KKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEF 247


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 713 TXKVHVDRPYPXHIPKPVP 769
           T  +HV + YP  +PKP+P
Sbjct: 44  TPVIHVLQ-YPGCVPKPIP 61


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 719  LXYLYLFVXR-GKEQAHVRNLYGVRYFFLYWVRSGHVH 609
            L  L +F+ +  K+Q HV+   GVR    Y   +  VH
Sbjct: 1278 LFVLVVFLLQLNKDQIHVKWPLGVRTNITYIEETSEVH 1315


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 719  LXYLYLFVXR-GKEQAHVRNLYGVRYFFLYWVRSGHVH 609
            L  L +F+ +  K+Q HV+   GVR    Y   +  VH
Sbjct: 1278 LFVLVVFLLQLNKDQIHVKWPLGVRTNITYIEETSEVH 1315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,913
Number of Sequences: 336
Number of extensions: 2713
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)